mRNA_L-elsbetiae_contig8116.17108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8116.17108.1
Unique NamemRNA_L-elsbetiae_contig8116.17108.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.320e-49
Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 2
Query:   14 MAMRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 289
            MAMRGVGK TR+TYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTP+AEPGAAGP      SSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN
Sbjct:    1 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.100e-20
Identity = 52/92 (56.52%), Postives = 60/92 (65.22%), Query Frame = 2
Query:   20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE 295
            M GVG ++ +T++  APS YVAG+GRGAVGFTTRSDIGPAR        A               P+FG APVGYVAGRGRGMG+LAKS  E
Sbjct:    1 MSGVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPARPAFDPTNPAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKSQGE 92          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.560e-20
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 2
Query:   62 GAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPV 238
            GAPSN+VAGLGRGAVGFT RSDIGPART IAE GA GP      S G +KDPDFGP PV
Sbjct:   16 GAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGASCGVSKDPDFGPVPV 74          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.050e-18
Identity = 51/90 (56.67%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   29 VGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPD-FGPAPVGYVAGRGRGMGDLAKSNSE 295
            VG ++  TY    PSNYVAG+GRGA+GFTTRSDIGPAR          P      +      PD FGPAPVGYVAGRGRGMGDLA+   E
Sbjct:    1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPAR----------PAPPMGGAXXXXXXPDPFGPAPVGYVAGRGRGMGDLARGQDE 80          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.620e-17
Identity = 48/92 (52.17%), Postives = 55/92 (59.78%), Query Frame = 2
Query:   20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE 295
            M G G Q   TY+ GAP  Y AG GRGA+GFTTRSDIGPAR+ + E                    +FG  P GYVAGRGRGMGDLA+S +E
Sbjct:    1 MSGRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPEV-------------------NFGQPPPGYVAGRGRGMGDLARSQAE 73          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 1.020e-15
Identity = 51/89 (57.30%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   26 GVGKQTRATY-NAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDP--DFGPAPVGYVAGRGRGMGDLAK 283
            GVG +T  T+ N   PSNYVAGLGRGAVGFTTRSDIGPART   + GAA            A+ P  DFG A  GYVAG GRG   L K
Sbjct:    3 GVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAA-----------PAQPPVADFGAAXXGYVAGAGRGASILGK 80          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.070e-13
Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRG 265
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR+P+   G A        +   A  P   PAP    AGRGRG
Sbjct:    1 MSGLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGP-PAPFLPGAGRGRG 81          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 72.8 bits (177), Expect = 7.200e-13
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGM 268
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+A  G+  P        GA   P     P    AGRGRG+
Sbjct:    1 MSGLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPV------GGA---PGXXAPPYLPGAGRGRGV 74          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.750e-12
Identity = 44/95 (46.32%), Postives = 53/95 (55.79%), Query Frame = 2
Query:   20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRG---MGDLAKSNSE 295
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G            G   +    P P    AGRG G   MG   +   E
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGRGVEIPGRPGPS---AGRGSGTAGMGGFGREKDE 92          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: H3GKT1_PHYRM (PRP1_N domain-containing protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3GKT1_PHYRM)

HSP 1 Score: 68.9 bits (167), Expect = 1.620e-11
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 2
Query:   20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPG 163
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDG 48          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0M8_9PHAE2.320e-4990.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0XAM5_9STRA6.100e-2056.52Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A6H5KUU3_9PHAE9.560e-2074.58PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3MCI9_9STRA2.050e-1856.67Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9D6Q2_9STRA8.620e-1752.17Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4D952_HETAK1.020e-1557.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6YDN0_9STRA2.070e-1354.88Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WCC0_GLOUD7.200e-1354.22PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A2P4Y3Q2_9STRA3.750e-1246.32Pre-mRNA-processing factor (Fragment) n=1 Tax=Phyt... [more]
H3GKT1_PHYRM1.620e-1168.75PRP1_N domain-containing protein n=24 Tax=Peronosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8116contigL-elsbetiae_contig8116:3858..4912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog65071.PYU1_T002611
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.factor. Source PGD
EggNOG OGs1MA7B@121069,KOG0495@1,KOG0495@2759
COG Functional cat.A
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons2
Model size295
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8116.17108.1prot_L-elsbetiae_contig8116.17108.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8116 3871..4912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.1623054-UTR-L-elsbetiae_contig8116:3857..38701622816896.1623054-UTR-L-elsbetiae_contig8116:3857..3870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8116 3858..3870 +
1691683894.7942095-UTR-L-elsbetiae_contig8116:3857..38701691683894.7942095-UTR-L-elsbetiae_contig8116:3857..3870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8116 3858..3870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.1747298-CDS-L-elsbetiae_contig8116:3870..39191622816896.1747298-CDS-L-elsbetiae_contig8116:3870..3919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8116 3871..3919 +
1691683894.8067503-CDS-L-elsbetiae_contig8116:3870..39191691683894.8067503-CDS-L-elsbetiae_contig8116:3870..3919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8116 3871..3919 +
1622816896.1858313-CDS-L-elsbetiae_contig8116:4679..49121622816896.1858313-CDS-L-elsbetiae_contig8116:4679..4912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8116 4680..4912 +
1691683894.8159845-CDS-L-elsbetiae_contig8116:4679..49121691683894.8159845-CDS-L-elsbetiae_contig8116:4679..4912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8116 4680..4912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8116.17108.1

>prot_L-elsbetiae_contig8116.17108.1 ID=prot_L-elsbetiae_contig8116.17108.1|Name=mRNA_L-elsbetiae_contig8116.17108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MAMRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPG
AAGPPGAAGPSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE
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mRNA from alignment at L-elsbetiae_contig8116:3858..4912+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8116.17108.1 ID=mRNA_L-elsbetiae_contig8116.17108.1|Name=mRNA_L-elsbetiae_contig8116.17108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1055bp|location=Sequence derived from alignment at L-elsbetiae_contig8116:3858..4912+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAAGCGCGACCATGGCGATGCGAGGAGTGGGAAAGCAAACCCGCGCAA CGTATAATGCCGGTGAGATGGCGAAACGTTTAGTAAAATTGATCGCACAT GGGCTTGCAGCAGGGCGAACACCCGCACGAGATGAGCCCTCACGCCCTCA CCCATTGCGGTAGCAGTAGCGGCTAGCTGAAGCAGCTTGGTGCATTATCC TCCTATAAGGGTGTTGGAAGTCAGGTGGAGAAAGACAAACAGCAACAAAC ACCCGCCATTTTTAATTTGCACCGCCTTCTCTGTACCTACATAAATGTAG GTCGATGAGGTAGGTACTTAGTGTAGGCACGGTCTGTGTGCGAGTACCTC CCGGATACGGCCGCGGTCCTTGTTAGTATGAAGCTAAGCAGCCGGCGCGA CAATTTTTGTGCGACACGATGGAAGCACTGAGCCATATCGCACGTGTTGT ATTATATTTTGTGCAGCGTGGGGGTCCCGATAAAGTGGGTCCCAGTGTGA TGCAGTACAAAACGTTGTAGGCAAAACTCGAAAGGAAACCCGCCTCCCTC CCTGCGATCCCGCGACGTTTGCGTGTACCTGACCGGCCATCTATAAACCC TCGGAGTGCAAATAAACGGCACACAGCTCACAAGCACCGACATGCCGCTC CCAGTGACTACCATAGACTATGTAAATACCCGTAAACACCATGTCAAGCA CACCGCTACGACTCCTTGTAGATACATACACACGTCTAGATACCTGTGTA GTCTACATAAGATACATAAACCGCCGATGACGACCACAAACCAACCGACC CCGCAACGAAACACACGCACAGGCGCCCCTTCGAACTACGTCGCCGGTCT CGGGCGCGGTGCCGTCGGCTTCACCACCCGGTCCGACATCGGCCCCGCCC GCACCCCGATCGCGGAGCCGGGGGCCGCCGGCCCCCCCGGCGCGGCCGGC CCATCCTCCGGAGCAGCCAAAGACCCGGACTTCGGGCCCGCGCCGGTGGG CTACGTCGCTGGCCGAGGGCGCGGGATGGGCGACCTCGCCAAGTCGAACA GCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8116:3858..4912+

>mRNA_L-elsbetiae_contig8116.17108.1 ID=mRNA_L-elsbetiae_contig8116.17108.1|Name=mRNA_L-elsbetiae_contig8116.17108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig8116:3858..4912+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGATGCGAGGAGTGGGAAAGCAAACCCGCGCAACGTATAATGCCGA
TGGCGATGCGAGGAGTGGGAAAGCAAACCCGCGCAACGTATAATGCCGGC
GCCCCTTCGAACTACGTCGCCGGTCTCGGGCGCGGTGCCGTCGGCTTCAC
CACCCGGTCCGACATCGGCCCCGCCCGCACCCCGATCGCGGAGCCGGGGG
CCGCCGGCCCCCCCGGCGCGGCCGGCCCATCCTCCGGAGCAGCCAAAGAC
CCGGACTTCGGGCCCGCGCCGGTGGGCTACGTCGCTGGCCGAGGGCGCGG
GATGGGCGACCTCGCCAAGTCGAACAGCGAGGCGCCCCTTCGAACTACGT
CGCCGGTCTCGGGCGCGGTGCCGTCGGCTTCACCACCCGGTCCGACATCG
GCCCCGCCCGCACCCCGATCGCGGAGCCGGGGGCCGCCGGCCCCCCCGGC
GCGGCCGGCCCATCCTCCGGAGCAGCCAAAGACCCGGACTTCGGGCCCGC
GCCGGTGGGCTACGTCGCTGGCCGAGGGCGCGGGATGGGCGACCTCGCCA
AGTCGAACAGCGAG
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