mRNA_L-elsbetiae_contig8116.17108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE) HSP 1 Score: 162 bits (410), Expect = 2.320e-49 Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 2 Query: 14 MAMRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 289 MAMRGVGK TR+TYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTP+AEPGAAGP SSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN Sbjct: 1 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 6.100e-20 Identity = 52/92 (56.52%), Postives = 60/92 (65.22%), Query Frame = 2 Query: 20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE 295 M GVG ++ +T++ APS YVAG+GRGAVGFTTRSDIGPAR A P+FG APVGYVAGRGRGMG+LAKS E Sbjct: 1 MSGVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPARPAFDPTNPAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKSQGE 92
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 9.560e-20 Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 2 Query: 62 GAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPV 238 GAPSN+VAGLGRGAVGFT RSDIGPART IAE GA GP S G +KDPDFGP PV Sbjct: 16 GAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGASCGVSKDPDFGPVPV 74
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.050e-18 Identity = 51/90 (56.67%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 29 VGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPD-FGPAPVGYVAGRGRGMGDLAKSNSE 295 VG ++ TY PSNYVAG+GRGA+GFTTRSDIGPAR P + PD FGPAPVGYVAGRGRGMGDLA+ E Sbjct: 1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPAR----------PAPPMGGAXXXXXXPDPFGPAPVGYVAGRGRGMGDLARGQDE 80
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 8.620e-17 Identity = 48/92 (52.17%), Postives = 55/92 (59.78%), Query Frame = 2 Query: 20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE 295 M G G Q TY+ GAP Y AG GRGA+GFTTRSDIGPAR+ + E +FG P GYVAGRGRGMGDLA+S +E Sbjct: 1 MSGRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPEV-------------------NFGQPPPGYVAGRGRGMGDLARSQAE 73
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK) HSP 1 Score: 78.2 bits (191), Expect = 1.020e-15 Identity = 51/89 (57.30%), Postives = 55/89 (61.80%), Query Frame = 2 Query: 26 GVGKQTRATY-NAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDP--DFGPAPVGYVAGRGRGMGDLAK 283 GVG +T T+ N PSNYVAGLGRGAVGFTTRSDIGPART + GAA A+ P DFG A GYVAG GRG L K Sbjct: 3 GVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAA-----------PAQPPVADFGAAXXGYVAGAGRGASILGK 80
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.070e-13 Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 2 Query: 20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRG 265 M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR+P+ G A + A P PAP AGRGRG Sbjct: 1 MSGLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGP-PAPFLPGAGRGRG 81
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD) HSP 1 Score: 72.8 bits (177), Expect = 7.200e-13 Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 2 Query: 20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGM 268 M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+A G+ P GA P P AGRGRG+ Sbjct: 1 MSGLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPV------GGA---PGXXAPPYLPGAGRGRGV 74
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 3.750e-12 Identity = 44/95 (46.32%), Postives = 53/95 (55.79%), Query Frame = 2 Query: 20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRG---MGDLAKSNSE 295 M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G G + P P AGRG G MG + E Sbjct: 1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGRGVEIPGRPGPS---AGRGSGTAGMGGFGREKDE 92
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: H3GKT1_PHYRM (PRP1_N domain-containing protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3GKT1_PHYRM) HSP 1 Score: 68.9 bits (167), Expect = 1.620e-11 Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 2 Query: 20 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPG 163 M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G Sbjct: 1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDG 48 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8116.17108.1 >prot_L-elsbetiae_contig8116.17108.1 ID=prot_L-elsbetiae_contig8116.17108.1|Name=mRNA_L-elsbetiae_contig8116.17108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp MAMRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGback to top mRNA from alignment at L-elsbetiae_contig8116:3858..4912+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8116.17108.1 ID=mRNA_L-elsbetiae_contig8116.17108.1|Name=mRNA_L-elsbetiae_contig8116.17108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1055bp|location=Sequence derived from alignment at L-elsbetiae_contig8116:3858..4912+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8116:3858..4912+ >mRNA_L-elsbetiae_contig8116.17108.1 ID=mRNA_L-elsbetiae_contig8116.17108.1|Name=mRNA_L-elsbetiae_contig8116.17108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig8116:3858..4912+ (Laminarionema elsbetiae ELsaHSoW15)back to top |