prot_L-elsbetiae_contig794.16907.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig794.16907.1
Unique Nameprot_L-elsbetiae_contig794.16907.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1041
Homology
BLAST of mRNA_L-elsbetiae_contig794.16907.1 vs. uniprot
Match: D8LBR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR7_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 4.170e-123
Identity = 292/554 (52.71%), Postives = 341/554 (61.55%), Query Frame = 0
Query:  507 PCVVPPLTADCDEREDGLEASAALVGTAGSGERSSTTEDAVPTRRPGAASSSTSPPLEERA--SSLAGAGHGAAT-IARVASLEFAGRPSWKVSSVVVTLAAGNSSRRSPGAXXXXXXXXXXXXXXXXSLTATIVVCHSGGVSVWGLTDTEAVCTHLSPALAGVTKEAITGSFLAAAVVGGDPAEVKPSATRAPGGS-GTCIVAIGRHGTDPGLPIFRVWQQQXXXXXXXXXXXQQGSSSPLLPISPQDAERLGGRSSSHGA-GGTAVREKAAPA----VLTITLRKKFSKFFPPVVPRHVRPCLCVCGYEPAEVVGLNGHGRGDGVDAGSTGEESGAGA-----AGKITAVMALGGKVLKLVFGAGRSGAQAFSARTLPTGVATEAVCTSLAPVPSNPFLVCGSLPSANTVAMWDVRKAEILFALPLTALSICVPATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPQLLCLLATGNR------EGRVDATRESRKTGCGLFGIFCIGDGDGAGAHSCGEVSAISLGSGGESEGNAAPVLGAGGNRR 1040
            PC+VPPLTAD DER+             G    S  +ED   TR P      T PP  E A  SS A   H   T IARVA+L+F+G+PS  VSSVVVT +AG+  R S   XXXXXXXXX       + TA+IVVCHSGGVSVW LTD+EA+CTHLSP LA   KE +   F+AAAVVGGD A   PSATRAPGG    CI+A+GR GTDPG PIFRVWQQ              GS SP+ P++PQ A R   R SS G  GG+A R K APA    VLT T++KKFSKFFPP VP HV PCLCVCGY      G NG  RGDG    + G+E G GA     A +ITAVMALGGK L+LVFGAGRSG++ F A+ LP  +A +AV TSLAPVPSNP+LVC S P  N+V +W+V     LF LP+T +S+CVP                      XXXXXXXXXX   + P++LCLLATG+R      EG V +TRE+ K GCGLFG++C G   GAG HSCG VSAI L +  E+     PV G G N R
Sbjct:  259 PCIVPPLTADSDERDGDSXXXXXXXXXXGESGVSDASEDVAATRGP------TVPPSSENAPPSSCADGRHSWPTAIARVATLDFSGKPSLVVSSVVVT-SAGSRGRGSXXXXXXXXXXXXGSVTT--AATASIVVCHSGGVSVWDLTDSEAICTHLSPELASAAKELVPWRFMAAAVVGGDLAGSTPSATRAPGGGKDACIMAVGRQGTDPGSPIFRVWQQ--------------GSPSPVPPLTPQGAGRADRRRSSGGTVGGSAGRAKEAPALQPAVLTTTVKKKFSKFFPPAVPSHVTPCLCVCGYS-----GANGE-RGDGAGGAAVGDEGGPGAETSEFAREITAVMALGGKALRLVFGAGRSGSETFVAKQLPARLADDAVYTSLAPVPSNPYLVCASAPLVNSVLVWNVLDLRPLFTLPITTVSVCVPLAAAAAGNAAVARGVPRVAEAAXXXXXXXXXXAKPA-PRMLCLLATGSRHAGGSSEGGVSSTRETSKVGCGLFGVYCGGGDGGAGKHSCGRVSAIRLEADAEAGAGERPVAGEGENGR 782          
BLAST of mRNA_L-elsbetiae_contig794.16907.1 vs. uniprot
Match: A0A6H5KBZ1_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ1_9PHAE)

HSP 1 Score: 379 bits (972), Expect = 1.700e-110
Identity = 293/560 (52.32%), Postives = 336/560 (60.00%), Query Frame = 0
Query:  487 SSPLRVPARTSPCKSQPTSLPCVVPPLTADCDEREDGLEASAALVGTAGSGERSSTTEDAVPTRRPGAASSSTSPPLEERA--SSLAGAGHG-AATIARVASLEFAGRPSWKVSSVVVTLAAGNSSRRSPGAXXXXXXXXXXXXXXXXSLTATIVVCHSGGVSVWGLTDTEAVCTHLSPALAGVTKEAITGSFLAAAVVGGDPAEVKPSATRAPGGS-GTCIVAIGRHGTDPGLPIFRVWQQQXXXXXXXXXXXQQGSSSPLLPISPQDAERLGGR-SSSHGAGGTAVREKAAP----AVLTITLRKKFSKFFPPVVPRHVRPCLCVCGYEPAEVVGLNGHGRGDGVDAGSTGEESGAGA-----AGKITAVMALGGKVLKLVFGAGRSGAQAFSARTLPTGVATEA-VCTSLAPVPSNPFLVCGSLPSANTVAMWDVRKAEILFALPLTALSICVPATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD------PQLLCLLATGNR------EGRVDATRESRKTGCGLFGIFCIGDGDGAGAHSCGEVSAISL 1019
            S P   PA T P + Q    P VVP LTAD DER D             SG  S  +ED   T  P      T PP  E A  SS A   H   A IARVA+L+F+G+PS  VSSVVVT A   +S      XXXXXXXXXXXXX   + TA+IVVCHSGGVSVW LTD+EA+CTHLSP LA   KE +   F+AAAVVGGD A   PSATRAPGG  G  I+A+GR GTDPG PIFRVWQQ              GS SP+ P++PQDA R   R SS         R K AP    AVLT T++KKFSKFFPP VP H+ PCLCVCGY  A     NG  RGDG    + G+E G GA     AG+ITAVMALGGK L+LVFGAGRSG++ F A+ LPT +A +A V TSLAPVPSNP+LVC S P  N V +W+V     LF LP+T +S+CVP  +                   XXXXXXXXXXXXX        P++LCLLATG+R      E  V +TRE  K  CGLFG++C G   GAG HSCG VSAI L
Sbjct:  453 SQPSPPPAGTLPQERQAKVGPWVVPLLTADSDERNDDSXXXXXXXXXXXSGV-SDASEDVAATCGP------TVPPSSEDAPPSSCADGRHSWPAAIARVATLDFSGKPSLAVSSVVVTSAGSRAS-----GXXXXXXXXXXXXXVATAATASIVVCHSGGVSVWDLTDSEAICTHLSPELASAAKELVPWKFMAAAVVGGDLAGSTPSATRAPGGGKGAYIMAVGRQGTDPGSPIFRVWQQ--------------GSPSPVPPLTPQDARRADRRRSSGXXXXXXXXRAKGAPSLQPAVLTTTVKKKFSKFFPPAVPSHIMPCLCVCGYSVA-----NGE-RGDGAGGMAAGDEDGPGAGTAELAGEITAVMALGGKALRLVFGAGRSGSETFVAKQLPTKLADDAAVYTSLAPVPSNPYLVCASAPLVNAVLVWNVLDLRPLFTLPITTVSVCVPLASAAVGNAAVARGVPMVAEAAXXXXXXXXXXXXXXXXXXKPAPRMLCLLATGSRHAGGSSESGVSSTREKSKVVCGLFGVYCGGGDGGAGKHSCGRVSAIRL 980          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig794.16907.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBR7_ECTSI4.170e-12352.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBZ1_9PHAE1.700e-11052.32RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 182..206
e-value: 0.0018
score: 27.5
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 184..203
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 180..209
score: 8.976
NoneNo IPR availableGENE3D2.20.28.140coord: 176..224
e-value: 6.6E-6
score: 27.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig794contigL-elsbetiae_contig794:2324..6660 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig794.16907.1mRNA_L-elsbetiae_contig794.16907.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig794 2324..6660 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig794.16907.1 ID=prot_L-elsbetiae_contig794.16907.1|Name=mRNA_L-elsbetiae_contig794.16907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1041bp
MSRAYRPRLSKDKAVAQRLQDLSIARQLATAVDALDTAAACTPSAAAAAA
GESDAGENITRLSDDSVKLPSTPAPMPMLLKENGSSSRSRRNLNRTGKTS
TPAGKPSGNRAPATAETTATATATATGLAVGTAVSPASSLKRGGRSSRKR
DILGSKKGGSGGDSGGGGSGGGSGGGSGSRRGGWACVSCSFLNLATAKKC
RMCSTKNYQARLSPPTASAPAPSPTVAAAMGLAGGGTGGSCESVVQGETR
HPQRRRPSVGGARERRLPRRVQQETGAANSSSTVTGRRERKSRNSAQKGG
AGVESDAGAGRDGSGGGCGDGGSGGGGGIASRNRRRHSAPVCASTATGAD
AEGVVISLSAGEAAAAAAAAAAAAAAAAAAAAAHSTPLRKRGKGVKGGAM
VVAGAATPSSGGSGDGGGDATSTDGADGAEFVSQRTKRASSSSSSRKRGK
KRPRSPIPTTAATAAAATATAAATAETAEEVDAAAYSSPLRVPARTSPCK
SQPTSLPCVVPPLTADCDEREDGLEASAALVGTAGSGERSSTTEDAVPTR
RPGAASSSTSPPLEERASSLAGAGHGAATIARVASLEFAGRPSWKVSSVV
VTLAAGNSSRRSPGAAAAAAAAAAAATATAASLTATIVVCHSGGVSVWGL
TDTEAVCTHLSPALAGVTKEAITGSFLAAAVVGGDPAEVKPSATRAPGGS
GTCIVAIGRHGTDPGLPIFRVWQQQQQQQTQTQTQLQQGSSSPLLPISPQ
DAERLGGRSSSHGAGGTAVREKAAPAVLTITLRKKFSKFFPPVVPRHVRP
CLCVCGYEPAEVVGLNGHGRGDGVDAGSTGEESGAGAAGKITAVMALGGK
VLKLVFGAGRSGAQAFSARTLPTGVATEAVCTSLAPVPSNPFLVCGSLPS
ANTVAMWDVRKAEILFALPLTALSICVPATTTTAAAREAMAMSPLLYSSA
AAAAAAAAAAARRSDPQLLCLLATGNREGRVDATRESRKTGCGLFGIFCI
GDGDGAGAHSCGEVSAISLGSGGESEGNAAPVLGAGGNRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2