prot_L-elsbetiae_contig7752.16695.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7752.16695.1
Unique Nameprot_L-elsbetiae_contig7752.16695.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length314
Homology
BLAST of mRNA_L-elsbetiae_contig7752.16695.1 vs. uniprot
Match: D7FHG5_ECTSI (Ubiquitination factor E4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG5_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 3.310e-133
Identity = 234/283 (82.69%), Postives = 245/283 (86.57%), Query Frame = 0
Query:    1 SLATVREALVGLVTTLLKAKQAREQVLCWVAAVANHNRRVLTFEGRERDGFHQGFENLPLSSEGMLGNVLWALLRLCEPFLSAGDPKAEALAAKTDLDYFRGSDRGSRWLDQRNQSRIAQFEANRAALLASATAEEGAXXXXXXXXXXXXXXXXKE---------VDPKSKTFGTTAEFAGLAARLLHVGVGQRVKQCQARMEGGSLTKLMLQLVDMDPDIVLPSLRFLRFQASSLTKHAAVGRGVARSGSGEPLPPLPMPPPPRFAMLPAHLMENVGDMIKF 274
            SL TVREALVGL+TTLLKAKQAREQVL WV  VANHNR      GRERDGFHQGFE LPLSSEGMLGNVLWALLRLCEPFL+AGDPKAEALA KTDLDYFRGSDR SRWLDQRNQSRIAQFEANRAALLASA      XXXXXXXXXXXXXXXX           +DPKSKTFGTTAEFAGLAARLLHVG+GQRVKQCQ R+E G+LTKLMLQLVDMDPDIVLPSLRFLRFQAS L KHA++GRG+ R+  GEPLPPLPMPPPPRFAMLPAHLME+V DMIKF
Sbjct:  180 SLTTVREALVGLLTTLLKAKQAREQVLQWVGEVANHNR------GRERDGFHQGFEVLPLSSEGMLGNVLWALLRLCEPFLTAGDPKAEALADKTDLDYFRGSDRVSRWLDQRNQSRIAQFEANRAALLASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDPKSKTFGTTAEFAGLAARLLHVGIGQRVKQCQTRLEEGALTKLMLQLVDMDPDIVLPSLRFLRFQASRLIKHASIGRGITRNAMGEPLPPLPMPPPPRFAMLPAHLMEDVSDMIKF 456          
BLAST of mRNA_L-elsbetiae_contig7752.16695.1 vs. uniprot
Match: A0A6H5L2Y3_9PHAE (Ufd2P_core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Y3_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 1.770e-89
Identity = 194/305 (63.61%), Postives = 201/305 (65.90%), Query Frame = 0
Query:    1 SLATVREALVGLVTTLLKAKQAREQVLCWVAAVANHNRRVLTFEGRERDGFHQGFENLPLSSEGMLGNVLWALLRLCEPFLSAGDPKAEALAAKTDLDYFRGSDR-----------------------------GSRWLDQRNQSRIAQFEANRAALLASATAEEGAXXXXXXXXXXXXXXXXKE----------VDPKSKTFGTTAEFAGLAARLLHVGVGQ-------------------------------------------RVKQCQARMEGGSLTKLMLQLVDMDPDIVLPSLRFLRFQ 223
            SL TVREALVGL+TTLLKAKQAREQVL WV AVANHNR      GRERDGFHQGFE LPLSSEGMLGNVLWALLRLCEPFL+AGDPKAEALA KTDLDYFRGSDR                              SRWLDQRNQSRIAQFEANRAALLASA      XXXXXXXXXXXXXXXX            +DPKSK+FGTTAEFAGLAARLLHVG+GQ                                           RVKQCQ R+E G+LTKLMLQLVDMDPDIVLPSLRFLRFQ
Sbjct:  357 SLTTVREALVGLLTTLLKAKQAREQVLQWVGAVANHNR------GRERDGFHQGFEVLPLSSEGMLGNVLWALLRLCEPFLTAGDPKAEALADKTDLDYFRGSDRIDVSDDTELWSESPEEGGEGDDGAAGGAGVSRWLDQRNQSRIAQFEANRAALLASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDPKSKSFGTTAEFAGLAARLLHVGIGQAYRLFTATNRKMERWRGARDSSKKDLEEGESTLSAHDKRQLEKRVKQCQTRLEEGALTKLMLQLVDMDPDIVLPSLRFLRFQ 655          
BLAST of mRNA_L-elsbetiae_contig7752.16695.1 vs. uniprot
Match: A0A1Y1Y7N9_9FUNG (U-box domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y7N9_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 5.940e-5
Identity = 68/328 (20.73%), Postives = 129/328 (39.33%), Query Frame = 0
Query:    1 SLATVREALVGLVTTLLKAK-QAREQVLCWVAAVANHNRRVLTFEGRERDGFHQGFENLPLSSEGMLGNVLWALLRLCEPFLSAGDPKAEALAAKTDLDYFRGSDRGSRWLDQRNQSRIAQFEANRAALLASATAEEGAXXXXXXXXXXXXXXXX--------------KEVDPKSKTFGTTAEFAGLAARLLHVGVGQRV-KQCQARMEGGSLTKLMLQLVDMDPDIVLPSLRFLRFQASSLTKHAAVGRGVARSGSGEPLPPLPMPPPPRFAMLPAHLMENVGDMIKFAAYTCPPDSRSGLTPLELISPMEASSLLSFLVLFIGTS 312
            +L  ++  L  ++ ++++A  ++R+ +L + A V   N +    +           +   +SS+G + N+   LL+ C+PFL A   K +    + D DYFR SD     +D    ++I   +    +    +  +  A                              ++     K +    E A   A      + + + K+C+A++E     KL L    ++  ++L S+RF  F  + L +     +    +    PLP      PPRFAMLP +++E++ +   F A            P           L++F+V FIG +
Sbjct:  306 TLQNLQSTLFNIMNSIVRASPESRQSLLKYYAEVIKKNEKRAQMQ----------VDRKTVSSDGYMTNLTTTLLKFCDPFLDAKSSKID----RVDPDYFRKSD----LIDIAETTKINATQDESDSYYKQSAEDSKAPNFISDVFFLTIEFHHYGLLRSFAYYNNFIRDFSEMRKQYERMKEDAPRWANTPTAALNEEILKRCKAQLEKQMTHKLCLDTQLLESQLLLDSMRFYSFVMNWLIRLVDPKQQHPWTRINLPLP---AEIPPRFAMLPEYIIEDIAEFFLFVAR---------YNPSLFTQSSSCDDLINFIVTFIGNT 603          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7752.16695.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHG5_ECTSI3.310e-13382.69Ubiquitination factor E4 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L2Y3_9PHAE1.770e-8963.61Ufd2P_core domain-containing protein n=1 Tax=Ectoc... [more]
A0A1Y1Y7N9_9FUNG5.940e-520.73U-box domain-containing protein n=1 Tax=Basidiobol... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019474Ubiquitin conjugation factor E4, corePFAMPF10408Ufd2P_corecoord: 184..311
e-value: 1.2E-8
score: 34.0
coord: 2..190
e-value: 1.8E-16
score: 59.9
NoneNo IPR availablePANTHERPTHR13931UBIQUITINATION FACTOR E4coord: 2..311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7752contigL-elsbetiae_contig7752:735..8453 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7752.16695.1mRNA_L-elsbetiae_contig7752.16695.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7752 735..8453 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7752.16695.1 ID=prot_L-elsbetiae_contig7752.16695.1|Name=mRNA_L-elsbetiae_contig7752.16695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
SLATVREALVGLVTTLLKAKQAREQVLCWVAAVANHNRRVLTFEGRERDG
FHQGFENLPLSSEGMLGNVLWALLRLCEPFLSAGDPKAEALAAKTDLDYF
RGSDRGSRWLDQRNQSRIAQFEANRAALLASATAEEGAGLGGGGGGGGEE
KEAEKEVDPKSKTFGTTAEFAGLAARLLHVGVGQRVKQCQARMEGGSLTK
LMLQLVDMDPDIVLPSLRFLRFQASSLTKHAAVGRGVARSGSGEPLPPLP
MPPPPRFAMLPAHLMENVGDMIKFAAYTCPPDSRSGLTPLELISPMEASS
LLSFLVLFIGTSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019474Ub_conjug_fac_E4_core