prot_L-elsbetiae_contig7728.16676.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7728.16676.1
Unique Nameprot_L-elsbetiae_contig7728.16676.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length176
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7728.16676.1 vs. uniprot
Match: D7G7T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T2_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.520e-73
Identity = 119/170 (70.00%), Postives = 133/170 (78.24%), Query Frame = 0 
Query:   12 AASWHAALLLLVLTTLQQLSFC----GSFPAPRCTSKMFKARYPLEGGPPQVKLHVAIIVQDTESIG------NDNEQ---KRWVLFDFLPAEPTAFTTTLKLLTAQDVQGNLRERELRFLPPGSVCVGQSDATLEDMRGFVARYPDRLSLVSNNCVSFVDAFVERHRLE 168
            A  WHAALLLL+L++L+QL FC    G  P  R   KMFKARYPLEGGPPQVKLH+AIIV+D+ S G      N  ++   +R VLFDFLP EPTAF TTL+LLT  DV GNLRERELRFLPPGSV VG+SDAT+ DMRGFVA+YPDRLSLVSNNC SFVDAFV RHRLE
Sbjct:   12 AGPWHAALLLLLLSSLRQLGFCSALLGVAPPHRSNFKMFKARYPLEGGPPQVKLHIAIIVEDSRSTGEKGGRPNSEDRDTGRRLVLFDFLPKEPTAFETTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE 181
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7728.16676.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7T2_ECTSI1.520e-7370.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36342FAMILY NOT NAMEDcoord: 75..164
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..175
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..33
score: 0.765

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7728contigL-elsbetiae_contig7728:6042..6569 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7728.16676.1mRNA_L-elsbetiae_contig7728.16676.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7728 5982..7374 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7728.16676.1 ID=prot_L-elsbetiae_contig7728.16676.1|Name=mRNA_L-elsbetiae_contig7728.16676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MTLNKGIKSSRAASWHAALLLLVLTTLQQLSFCGSFPAPRCTSKMFKARY
PLEGGPPQVKLHVAIIVQDTESIGNDNEQKRWVLFDFLPAEPTAFTTTLK
LLTAQDVQGNLRERELRFLPPGSVCVGQSDATLEDMRGFVARYPDRLSLV
SNNCVSFVDAFVERHRLEQEGGRYE*
back to top