prot_L-elsbetiae_contig756.16457.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig756.16457.1
Unique Nameprot_L-elsbetiae_contig756.16457.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length627
Homology
BLAST of mRNA_L-elsbetiae_contig756.16457.1 vs. uniprot
Match: D7G5B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B7_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 2.980e-85
Identity = 187/409 (45.72%), Postives = 235/409 (57.46%), Query Frame = 0
Query:  218 TADRRRTFLRHAS-THNTYTPAVADTTGGADPVAGVSNGSRRKPETSTSETRAVPAEQGHQHHNGARRSTFLTPFASHVTADGTG------------DFTPSGGNVGVAGTQEDEDTAASHAGVARAQGRARIWSFNCAVA--LAPVMFFFLVAGVLWAWPHVQVGAGRAWSTLHGFTARNPAAGKCFLHPSERDTNQAASICKKGADVVDCPDQATCGGGAILSCSFFLERKMDGSACVLTAEAEEEVDAVVQALRILTVEQQCKGNGLIMPSPKAFSARSFITLADAAAAQNRGPLSFLAGMPPGNV-GLIDLEGEAAPDFGGSEGDDALEGNSSNMGSGSERIARLSESAYNAVMLTRSWQCRARLFVWGGLMEYWPFCLGLYALGLIVVCLDCRRRKNYKRHVEV 610
            T  R+ +FLRHA+ T  T +   A  + G      +++ +   P+T   + R  P+    +    A R T  T  A   T D  G            D  P       AG   D D A         +G++  W+F CAV   LAPV+   LV+G+L AWPHVQV AG AW    G TA+ P+  KCFL P E++      +CK G + +DCPD ATCG G IL C+     + D +ACVL AEAE+E  AVV+ALR LT E+ CKG GLIMP  +A +  SFITL DAA AQ+RGPLS LAGMPPGNV GLI+LEGE A  FGG  G D  EG +   GSG ER+ARLSESA++AVM T  W+C+ARL      M YW +CL +Y L +  VCLD RRR +Y RHV+V
Sbjct:  180 TPSRKSSFLRHANGTEGTDSATAASASDGPS----LNSDNLGGPKT-RGQARRGPSFLDRER---AGRDTVATAGAEGRTPDMKGTRGQKDKSKSKVDSVPQPAQATDAGADADGDDARPR------RGKSLEWTFKCAVVVVLAPVVVLLLVSGLLVAWPHVQVAAGGAWGAFRGLTAKTPSVEKCFLQPGEQED----IVCKSGTEAMDCPDHATCGAGRILHCNLPYTLRKDRAACVLVAEAEKEAKAVVEALRTLTAEELCKGKGLIMP--RASARGSFITLTDAATAQSRGPLSLLAGMPPGNVVGLIELEGEPAQVFGG--GQDGAEGCA---GSGMERVARLSESAHDAVMRTLGWRCKARLAAGSWFMTYWQYCLAMYCLVVGAVCLDLRRRNSYYRHVQV 563          
BLAST of mRNA_L-elsbetiae_contig756.16457.1 vs. uniprot
Match: A0A6H5L750_9PHAE (MSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L750_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 8.650e-80
Identity = 153/274 (55.84%), Postives = 178/274 (64.96%), Query Frame = 0
Query:  338 WSFNCAVALAPVMFFFLVAGVLWAWPHVQVGAGRAWSTLHGFTARNPAAGKCFLHPSERDTNQAASICKKGADVVDCPDQATCGGGAILSCSFFLERKMDGSACVLTAEAEEEVDAVVQALRILTVEQQCKGNGLIMPSPKAFSARSFITLADAAAAQNRGPLSFLAGMPPGNV-GLIDLEGEAAPDFGGSEGDDALEGNSSNMGSGSERIARLSESAYNAVMLTRSWQCRARLFVWGGLMEYWPFCLGLYALGLIVVCLDCRRRKNYKRHVEV 610
            W+F CAV +  VM   LV+G+L AWP VQV AG AW    G TA+ P   KCFL   E    Q   +CK G +  DCP  ATCG G IL C+     K D +ACVL AEAEEE  AVV+ALR LT E+ CKG GLIMP  +A S  SFITL DAA AQNRGPLS LAGMPPGNV GLI+LEGE A  FGG +     +G     GSG ER+ARLSESA++AVM T  W+C+ARL      M YW +CL +Y L +  VCLD RRR +Y RHV+V
Sbjct:  339 WAFKCAVVM--VMVLLLVSGLLVAWPQVQVAAGGAWGAFRGLTAKTPPVEKCFLQLGE----QGDVVCKSGTEATDCPAHATCGAGRILHCNLPYTLKKDRAACVLVAEAEEEAKAVVEALRTLTAEELCKGKGLIMP--RASSRGSFITLTDAATAQNRGPLSLLAGMPPGNVVGLIELEGEPAQVFGGGQ-----DGAEDCAGSGMERVARLSESAHDAVMDTLGWRCKARLAAGSWFMTYWQYCLAMYCLVVGAVCLDLRRRNSYYRHVQV 599          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig756.16457.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5B7_ECTSI2.980e-8545.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L750_9PHAE8.650e-8055.84MSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 570..596
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 340..362
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 597..626
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..339
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 363..569
NoneNo IPR availableTMHMMTMhelixcoord: 577..596
NoneNo IPR availableTMHMMTMhelixcoord: 340..362

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig756contigL-elsbetiae_contig756:4121..15519 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig756.16457.1mRNA_L-elsbetiae_contig756.16457.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig756 3791..15572 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig756.16457.1 ID=prot_L-elsbetiae_contig756.16457.1|Name=mRNA_L-elsbetiae_contig756.16457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=627bp
MTTPAKKKRRLAEGKAKALEYKASLKRKTAETAEPPPSESNGNPSSGKKP
RTKATPKGKSKGKSATHDEDERAKKAAKRWKSREHAKEYRKGLPNWKGSD
EGESDGTSDDGDDASDTCTSGAEEPAPTLAKLSPSPAALGLGPARNRAVR
SSRSQQGMGTVPAVSQAPDVPPMPTPAAPSRSRPKHPGGRSTHQHQSLPN
GNGGNNDSSGPPTPSPETADRRRTFLRHASTHNTYTPAVADTTGGADPVA
GVSNGSRRKPETSTSETRAVPAEQGHQHHNGARRSTFLTPFASHVTADGT
GDFTPSGGNVGVAGTQEDEDTAASHAGVARAQGRARIWSFNCAVALAPVM
FFFLVAGVLWAWPHVQVGAGRAWSTLHGFTARNPAAGKCFLHPSERDTNQ
AASICKKGADVVDCPDQATCGGGAILSCSFFLERKMDGSACVLTAEAEEE
VDAVVQALRILTVEQQCKGNGLIMPSPKAFSARSFITLADAAAAQNRGPL
SFLAGMPPGNVGLIDLEGEAAPDFGGSEGDDALEGNSSNMGSGSERIARL
SESAYNAVMLTRSWQCRARLFVWGGLMEYWPFCLGLYALGLIVVCLDCRR
RKNYKRHVEVRQYDVDIYCINAHANI*
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