prot_L-elsbetiae_contig7524.16415.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7524.16415.1
Unique Nameprot_L-elsbetiae_contig7524.16415.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length946
Homology
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BLAST of mRNA_L-elsbetiae_contig7524.16415.1 vs. uniprot
Match: A0A6H5LAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT0_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.000e-17
Identity = 69/112 (61.61%), Postives = 74/112 (66.07%), Query Frame = 0 
Query:  531 TAGSGGGRSGG-------PPTVRDEDLALVRRMHQENEGLLAVRRRIRKEVVALQDEEDELRRVLGLPSARTPETVGMPVTAPPLPLLPEPAAA-APARKKPRAKPQKRAEP 634
            T G GGG S G       P T RDEDLALVR MHQE EGLLAVR R+R+EVV LQDEEDELR VLGLP AR+   +  P   PPLP   EP+AA APA KK R  PQ R  P
Sbjct:  851 TRGGGGGTSDGSKDETEGPTTTRDEDLALVREMHQEREGLLAVRTRLRREVVTLQDEEDELRLVLGLPPARSELVLATP---PPLPPPVEPSAAVAPAEKKRRPNPQWRTTP 959
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BLAST of mRNA_L-elsbetiae_contig7524.16415.1 vs. uniprot
Match: D7FVQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ0_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.090e-14
Identity = 50/72 (69.44%), Postives = 55/72 (76.39%), Query Frame = 0 
Query:  531 TAGSGGGRSGG-------PPTVRDEDLALVRRMHQENEGLLAVRRRIRKEVVALQDEEDELRRVLGLPSART 595
            T G GGG S G       P T RDEDLALVR MHQE+EGLLAVR+R+R+EVV LQDEEDELR VLGLP AR+
Sbjct:  542 TRGGGGGTSDGNKDETEGPTTTRDEDLALVREMHQESEGLLAVRKRLRREVVTLQDEEDELRLVLGLPPARS 613
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7524.16415.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAT0_9PHAE5.000e-1761.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVQ0_ECTSI3.090e-1469.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 567..587
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 120..130
score: 52.65
coord: 31..41
score: 48.11
coord: 62..73
score: 56.25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7524contigL-elsbetiae_contig7524:170..6297 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7524.16415.1mRNA_L-elsbetiae_contig7524.16415.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7524 2..6408 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7524.16415.1 ID=prot_L-elsbetiae_contig7524.16415.1|Name=mRNA_L-elsbetiae_contig7524.16415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=946bp
MAAAAVAPPQSQPPSMPAAAGAAPDQASSPKRPRGRSRTTPLALSAPSMP
AAVRAAPDQASSPKRSRGRPRNAPSAPGAAAVAPPQPQPSPMSAVAVAPP
QSQSPSMPAAAGAAPDQASSPKPSRGRPKKAPAAPGAAGKVAKSGKSPTR
SAIAAVAGAAVAEAPSPSRKRTRLQKKNPPAPGMAGAEARGAVQPPGPTT
QPSSAAGARSPPPSAASPRGTASPKRKRGRRPSSPPAQAPSTPAAGGGAA
AVATAAAATAAAGAVAASPQGASSPSRPRSRRRKTLSVPEAACPDQPPAP
QTSTPTSRTSTAVAAVGPRQGRAIPERSLPICKRGRANTAIPSSSAPDTP
PAPREEEAPAHGSAAGITESETIGKRVRRQAQQQQQQQQQRWRRPAQQAS
VATVNSEDVNANGDAGAGGDAGAGGDAPIDGGFGNDGDDFFSGSGGDDAD
DAPNDTDEGCAETAKGDGKEREGEDAPPQAGGAALDQEGQRAKSSSTAAC
GARPAIQAGRGTPNQTASLSASERQVSRLGTAGSGGGRSGGPPTVRDEDL
ALVRRMHQENEGLLAVRRRIRKEVVALQDEEDELRRVLGLPSARTPETVG
MPVTAPPLPLLPEPAAAAPARKKPRAKPQKRAEPARQQPSVGTLPPLPPP
PPAGTTPPSPPAAKSVSSKVVAAPIPPSSGSSLGGDRDDHALPGGGSSSS
LPPMPGSPVGSIGRAPSENEDLDIGRLLFESDNDTSEDGGDSSTETPTSN
VAPPNVWKGPASPGAHAAVRGGPPPSRARGATGVLAGPGVFVGARRGRGH
QPNSGRGMPPGGLRGRGDAASRGAGGGGGGGGGGGGGGRGARGGRGGKKK
PNYFDPNAPVKRRASGRGGAPSRGAFGGTRGGRVGGGRGQMLGAPTGSRG
ALGVGSGVPVGNGTLGVGPQHPVTKHAARAGRAAGISSNGRPPGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif