prot_L-elsbetiae_contig75.16393.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig75.16393.1
Unique Name	prot_L-elsbetiae_contig75.16393.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	190

Homology

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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 2.040e-123
Identity = 170/189 (89.95%), Postives = 178/189 (94.18%), Query Frame = 0

Query:    1 MAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGILEHVISRV 189
            M   +DY ASLPGAPFGMAAEGKYFDPAGLA  QD ETIKKWREAELKHGRVSMLAA+GILVSEVFHP FMGPAYIGPAVEHAQQIATVYPLFWV S+G+IAFIEGQTIKDAWGTVSPVTGVGNLK EYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQE VDG+GILEH++SR+
Sbjct:   43 MTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 231

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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 7.340e-65
Identity = 103/182 (56.59%), Postives = 133/182 (73.08%), Query Frame = 0

Query:    1 MAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGIL 182
            M+  +DY A+LPGAPFG   +GK FDP  L+   D   IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+  YP FWV S+  +AFIE  TI  A+ T S VTG G LKE+Y PGDLGFDPL L P+D     +++++EL+ GR AMIG+ GM+VQE ++   IL
Sbjct:   41 MSAGSDYVATLPGAPFG---DGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219

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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 2.020e-62
Identity = 100/182 (54.95%), Postives = 129/182 (70.88%), Query Frame = 0

Query:    1 MAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGIL 182
            M+  +DY A+LPGAPFG   +GK FDP  L+   +   IK WREAE+KHGRV+MLA +G++V+E +HP FMGP YIGPAV+H Q+I+  +P FW  S+  +AFIE  TI  A+   SPVTG G L++EY PGDLGFDPL L PKD      +Q++EL+ GR AMIG+ GM+VQE V+   IL
Sbjct:   42 MSAGSDYVATLPGAPFG---DGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220

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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 3.000e-61
Identity = 100/182 (54.95%), Postives = 126/182 (69.23%), Query Frame = 0

Query:    1 MAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGIL 182
            M+   DY A+LPG      A GK FD   LA   D   IK WREAE+KHGRV+MLA +G++V+E +HPFFMGP YIGPAV+H Q+I   +P FW  S+  +AFIE  TIK A+   SPVTG G L++EY PGDLGFDP  + PKD      +Q++EL+ GR AMIG++GM+VQE V+GQ IL
Sbjct:   42 MSAGTDYLATLPG------ANGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217

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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 3.790e-61
Identity = 93/176 (52.84%), Postives = 132/176 (75.00%), Query Frame = 0

Query:    1 MAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECV 176
            M+  +DY ++LPGAPF   A+GK +DP GL+++ D E IKKWREAE+KHGRV+MLA++G+LV+E FHP F+GP YIGPA+ H ++I   +P FW  ++  IA++E + I   +  + PVTG G ++ +Y PGDLGFDPLGLAP+D  +  +++++EL+ GR AMIG+ GMIVQE V
Sbjct:   92 MSAGSDYVSTLPGAPF---ADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264

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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 8.370e-60
Identity = 98/184 (53.26%), Postives = 129/184 (70.11%), Query Frame = 0

Query:    1 MAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGILEH 184
            M+  +DY A+LPGAPF   ++GK FDP  L+       IKKWREAE+KHGRV+MLA++GILV+E +HP FMG  +IGPA+ H Q+I+  +P FW  S+  +AFIE  TI  A+ T S VTG G LKE+Y PGDLGFDPL L P       +++++EL+ GR AMIG+ GM+ QE V+GQ IL +
Sbjct:   41 MSAGSDYVATLPGAPF---SDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPN 221

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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 7.030e-55
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = 0

Query:   25 FDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGIL 182
            FDP GL+       IKKWREAE+KHGRV+MLA++G++V+E +HPFFMGP YIGPAV+H Q+I+  +P FW  S+  +AF+E  TI  A+ T S VTG G LKE+Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE V+   IL
Sbjct:   38 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195

[Close]

BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 8.030e-55
Identity = 88/161 (54.66%), Postives = 113/161 (70.19%), Query Frame = 0

Query:   23 KYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGILE 183
            K FDP GLA   +   IK WREAE+KHGRV+MLA++G+LV+E +HPFFMGP YIGPAV+H Q+I+  +P FW  S+  +A IE  TI  A+   S VTG G L++EY PGDLGFDPL L P D      +Q++EL+ GR AMIG+ G +VQE V+   IL+
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILD 175

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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.150e-52
Identity = 88/158 (55.70%), Postives = 114/158 (72.15%), Query Frame = 0

Query:   25 FDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGIL 182
            FDP GL+       IKKWREAE+KHGRV+MLA++G++V+E +HPFFMGP YIGPAV+H Q+I+  +P FW  S+  +AFIE  TI  A+ T S VTG G LKE+Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE V+   IL
Sbjct:  234 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391

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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA)

HSP 1 Score: 169 bits (428), Expect = 8.260e-50
Identity = 85/160 (53.12%), Postives = 107/160 (66.88%), Query Frame = 0

Query:   25 FDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTG----VGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQG 180
            FDP GL+   D+ T+KK++EAELKHGR++MLAA+GILV E FHP F G A  GPA+   QQ+  VYPLFWV     +AF+EG TI   W ++         V  LKE+Y PGD+GFDPLGL PKD   F  ++++EL+  R AMIGV GM+ QE V G G
Sbjct:   46 FDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLF-GGAISGPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLGPG 204

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FQG7_ECTSI	2.040e-123	89.95	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q6_ECTSI	7.340e-65	56.59	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	2.020e-62	54.95	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	3.000e-61	54.95	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G5B4_ECTSI	3.790e-61	52.84	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	8.370e-60	53.26	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	7.030e-55	55.06	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	8.030e-55	54.66	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	1.150e-52	55.70	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A7R9U0X8_9STRA	8.260e-50	53.13	Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 9..189 e-value: 1.9E-37 score: 131.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 17..174 e-value: 1.8E-35 score: 122.9
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 23..185
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 72..82
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 83..104
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..51
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 105..189
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 52..71
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 9..185
None	No IPR available	TMHMM	TMhelix		coord: 49..71
None	No IPR available	TMHMM	TMhelix		coord: 86..104

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig75	contig	L-elsbetiae_contig75:34345..37505 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig75.16393.1	mRNA_L-elsbetiae_contig75.16393.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig75 33545..38200 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig75.16393.1 ID=prot_L-elsbetiae_contig75.16393.1|Name=mRNA_L-elsbetiae_contig75.16393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
MAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHG
RVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGL
IAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFR
LIQSQELDLGRYAMIGVLGMIVQECVDGQGILEHVISRV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln