prot_L-elsbetiae_contig7408.16291.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig7408.16291.1
Unique Name	prot_L-elsbetiae_contig7408.16291.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	145

Homology

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BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Match: D7FN76_ECTSI (GDT1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN76_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.300e-57
Identity = 101/145 (69.66%), Postives = 118/145 (81.38%), Query Frame = 0

Query:    6 RVGMLLLLAGL-GMTLAQTGLSGAKNDLPP----AAEEDLQGTDFWKAFANSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFGYLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSHGGPSEELTEV 145
            RV +  +LAGL G+T+AQ+G+  +  D+      A E +     FW AFANS+AMIIATEIGDKTFFIAAI+AMS+PR+ VFGGAVGALAVMT LSA  GY LP+ILP++YTHYASALLFLYFGFRMLKEGM+SHGGPSEELTEV
Sbjct:    4 RVRVAAVLAGLVGVTMAQSGVGSSSGDMNENAVSAGEGEPPQVGFWTAFANSVAMIIATEIGDKTFFIAAIMAMSHPRLAVFGGAVGALAVMTVLSAALGYALPAILPRTYTHYASALLFLYFGFRMLKEGMESHGGPSEELTEV 148

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BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Match: A0A6H5KTH0_9PHAE (GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTH0_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 5.520e-54
Identity = 96/145 (66.21%), Postives = 114/145 (78.62%), Query Frame = 0

Query:    6 RVGMLLLLAGL-GMTLAQTGLSGAKNDLPPAAEEDLQG----TDFWKAFANSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFGYLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSHGGPSEELTEV 145
            RV +  +LAGL G+ +AQ+G+     D+   A    +G      FW AFANS+AMIIATEIGDKTFFIAAI+AMS+PR+ VFGGA+GALAVMT LSA  GY LP++L ++YTHYASALLFLYFG RMLKEGM+SHGGPSEELTEV
Sbjct:    4 RVRVAAVLAGLVGVAMAQSGVGSTSGDMNENAASAGEGKPRQVGFWTAFANSVAMIIATEIGDKTFFIAAIMAMSHPRLAVFGGAIGALAVMTVLSAALGYALPAVLSRTYTHYASALLFLYFGCRMLKEGMESHGGPSEELTEV 148

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BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Match: A0A836CAP1_9STRA (GDT1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAP1_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.590e-38
Identity = 71/105 (67.62%), Postives = 83/105 (79.05%), Query Frame = 0

Query:   42 GTDFWKAFANSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFGYLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSH-GGPSEELTEV 145
            G  FW  F + + MIIATEIGDKTFFIAAI+AM Y RM+VF GA+ ALA+MT LSA  G+ LP+ILP+ YTHYA ALLFLYFG +MLKEG ++  GGPSEEL EV
Sbjct:   89 GPGFWGGFVSGVGMIIATEIGDKTFFIAAIMAMQYSRMLVFAGAITALAIMTVLSAALGFALPNILPREYTHYAGALLFLYFGVKMLKEGFEADDGGPSEELAEV 193

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BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Match: A0A7S3UU97_HETAK (GDT1 family protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU97_HETAK)

HSP 1 Score: 138 bits (347), Expect = 1.690e-37
Identity = 79/155 (50.97%), Postives = 99/155 (63.87%), Query Frame = 0

Query:   11 LLLAGLGMTLAQTGLSGAKN-------------------DLPPAAEEDLQGTDFWKAFANSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFGYLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSHGG-PSEELTEV 145
            LLLA   + +  TG SG+++                   DL   A  D     F  AF  S+ MI+ATE+GDKTFFIAAILAM + R ++FGGA+GALA+MT LS   G+ LPS++P++YTHYASALLFLYFG R+LK+G    GG PSEEL EV
Sbjct:   11 LLLATFQLFIDATGTSGSESLPGDAQTDTLEHLGEALHDDLQSGAVADAASLKFMPAFVKSVLMIVATELGDKTFFIAAILAMRHSRFLIFGGAIGALALMTVLSTLMGFALPSLIPRTYTHYASALLFLYFGVRLLKDGAGMEGGGPSEELAEV 165

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BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Match: A0A7S3JXQ5_9STRA (GDT1 family protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXQ5_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.010e-35
Identity = 69/108 (63.89%), Postives = 83/108 (76.85%), Query Frame = 0

Query:   38 EDLQGTDFWKAFANSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFGYLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSHGGPSEELTEV 145
            E+ Q + F KAF NS+ MI ATE+GDKTFFIAAILAM + R +VF GA+ ALA+MT LSA  GY LPSILP++YTHYASA LF YFG R+L++    H GPS+EL EV
Sbjct:  116 EEQQFSAFSKAFVNSLGMIWATELGDKTFFIAAILAMRHSRCIVFSGALLALALMTVLSAALGYALPSILPRTYTHYASAFLFFYFGIRLLRDARSMHEGPSDELVEV 223

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BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Match: A0A7S2HJF0_9STRA (GDT1 family protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HJF0_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.520e-35
Identity = 69/108 (63.89%), Postives = 81/108 (75.00%), Query Frame = 0

Query:   39 DLQGTDFWKAFANSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFGYLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSHGG-PSEELTEV 145
            DL    FW AF NS  MII TEIGDKTFFIAA+LAM + R  +F GAV ALA+MT LSA  G+ LP++LP+ YTHYASALLFLYFG R+LK+  +  GG PS+EL EV
Sbjct:  110 DLDSKSFWAAFINSWLMIIVTEIGDKTFFIAAVLAMRHSRGAIFTGAVAALALMTVLSAAMGFALPNLLPRKYTHYASALLFLYFGIRLLKDASEMRGGGPSDELQEV 217

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BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Match: A0A7S3D9J8_9EUKA (GDT1 family protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D9J8_9EUKA)

HSP 1 Score: 132 bits (333), Expect = 6.580e-35
Identity = 67/101 (66.34%), Postives = 82/101 (81.19%), Query Frame = 0

Query:   45 FWKAFANSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFGYLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSHGGPSEELTEV 145
            F +AF  SI+MII +E+GDKTFFIAAILAM   R+VVF GA+ AL VMTALSA  GY LP++LP+ YTHYASA+LFL+FG+++LKEG +S GG S EL EV
Sbjct:   80 FVEAFVQSISMIIVSELGDKTFFIAAILAMKSNRVVVFSGAIAALGVMTALSAMMGYALPALLPRQYTHYASAVLFLFFGYKLLKEGYESEGGASSELQEV 180

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BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Match: A0A4D9CVK3_9STRA (GDT1 family protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 9.450e-35
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 0

Query:   37 EEDLQGTDFWKAFANSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFGYLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSHG-GPSEELTEV 145
            EE+     FW AF NS++MI+ TE+GDKTFFIAA+LAM Y R+++FGGA+ AL +MT LSA  G +LP++LP+ YTHYASALLFLYFG +++ E     G GPS+EL EV
Sbjct:   97 EEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAISALIIMTILSAAIGNVLPNVLPRIYTHYASALLFLYFGIKLIVEARGMEGSGPSDELQEV 206

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BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Match: A0A7S2RJT4_9STRA (GDT1 family protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJT4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 9.640e-35
Identity = 73/128 (57.03%), Postives = 89/128 (69.53%), Query Frame = 0

Query:   20 LAQTGLSGAKNDLPPAAEEDLQGT-DFWKAFANSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFGYLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSHG-GPSEELTEV 145
            L+  G+ GA N +       L G   FW AF NS  MII TE+GDKTFFIAA+LAM   R  V+ GAVGALA MT LSA  G++LP++LP+ YTHYASA LF+YFGF++LKE  +  G GPS+EL EV
Sbjct:   94 LSSVGVGGADNSV-------LSGVAGFWAAFLNSFLMIIVTELGDKTFFIAAVLAMRQDRWAVYLGAVGALAAMTVLSAIMGFMLPNLLPRQYTHYASAALFVYFGFKLLKEASEMEGDGPSDELQEV 214

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BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Match: A0A7S1CD49_9STRA (GDT1 family protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD49_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.190e-34
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 0

Query:   44 DFWKAFANSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFGYLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSHGG-PSEELTEV 145
            +FW +F NS+ MII TE+GDKTFFIAAILAM Y R  VFGGA+GALA+MTALSA  G+ LP+ILPK+YTHYA+  LF YFG ++LKE  +   G P+EEL E 
Sbjct:  128 EFWASFGNSVIMIIVTELGDKTFFIAAILAMQYDRAPVFGGAIGALALMTALSAAIGWALPAILPKTYTHYAAVALFAYFGAKLLKEAREMKDGEPNEELEEA 230

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7408.16291.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FN76_ECTSI	1.300e-57	69.66	GDT1 family protein n=1 Tax=Ectocarpus siliculosus...	[more]
A0A6H5KTH0_9PHAE	5.520e-54	66.21	GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 13...	[more]
A0A836CAP1_9STRA	1.590e-38	67.62	GDT1 family protein n=1 Tax=Tribonema minus TaxID=...	[more]
A0A7S3UU97_HETAK	1.690e-37	50.97	GDT1 family protein n=1 Tax=Heterosigma akashiwo T...	[more]
A0A7S3JXQ5_9STRA	2.010e-35	63.89	GDT1 family protein n=1 Tax=Aureoumbra lagunensis ...	[more]
A0A7S2HJF0_9STRA	2.520e-35	63.89	GDT1 family protein n=1 Tax=Dictyocha speculum Tax...	[more]
A0A7S3D9J8_9EUKA	6.580e-35	66.34	GDT1 family protein n=1 Tax=Palpitomonas bilix Tax...	[more]
A0A4D9CVK3_9STRA	9.450e-35	59.09	GDT1 family protein n=1 Tax=Nannochloropsis salina...	[more]
A0A7S2RJT4_9STRA	9.640e-35	57.03	GDT1 family protein n=1 Tax=Rhizochromulina marina...	[more]
A0A7S1CD49_9STRA	2.190e-34	64.08	GDT1 family protein n=1 Tax=Bicosoecida sp. CB-201...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001727	Gdt1 family	PFAM	PF01169	UPF0016	coord: 52..124 e-value: 8.8E-23 score: 80.4
IPR001727	Gdt1 family	PANTHER	PTHR12608	TRANSMEMBRANE PROTEIN HTP-1 RELATED	coord: 46..145
IPR001727	Gdt1 family	PROSITE	PS01214	UPF0016	coord: 60..69
None	No IPR available	PANTHER	PTHR12608:SF1	TRANSMEMBRANE PROTEIN 165	coord: 46..145
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..28
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 22..28
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 111..128
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 100..110
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 129..145
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 52..73
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 74..79
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..9
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 80..99
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 29..51
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 10..21
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..21 score: 0.897
None	No IPR available	TMHMM	TMhelix		coord: 7..26
None	No IPR available	TMHMM	TMhelix		coord: 50..72
None	No IPR available	TMHMM	TMhelix		coord: 111..128
None	No IPR available	TMHMM	TMhelix		coord: 79..101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7408	contig	L-elsbetiae_contig7408:1392..8339 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7408.16291.1	mRNA_L-elsbetiae_contig7408.16291.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig7408 1298..8339 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig7408.16291.1 ID=prot_L-elsbetiae_contig7408.16291.1|Name=mRNA_L-elsbetiae_contig7408.16291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MGSCCRVGMLLLLAGLGMTLAQTGLSGAKNDLPPAAEEDLQGTDFWKAFA
NSIAMIIATEIGDKTFFIAAILAMSYPRMVVFGGAVGALAVMTALSAGFG
YLLPSILPKSYTHYASALLFLYFGFRMLKEGMDSHGGPSEELTEV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001727	Gdt1