prot_L-elsbetiae_contig728.16145.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig728.16145.1
Unique Nameprot_L-elsbetiae_contig728.16145.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length275
Homology
BLAST of mRNA_L-elsbetiae_contig728.16145.1 vs. uniprot
Match: D7G3W7_ECTSI (Vps54_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W7_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 9.320e-92
Identity = 152/185 (82.16%), Postives = 168/185 (90.81%), Query Frame = 0
Query:   26 DMDVARLAVTRQIASMVQENYAALVGGMRQVQAVDLDLARAGVQISNGRRGLQRTVARSTGPVIRVVETVRRRDRLRLVETAVASCVEAMRAEGRVEGDLAAGRFTQAVATAELLSETMAGDEKLSTLCVLGGVRERAKAILPTVKKRAELAVAELCITFSPEGYGGIVEAFLMLEDRGALSPRP 210
            + DVARLAVT QIASMVQENYAALVGGMRQVQAVDLDLARAGVQISNGRRGLQR++ARSTGPV+R++ET RRRDRLRLVE   ASC++A+  EGRVEGDLAAGRFTQAVATAELL+ET+AGDE+LS+  VLGGVRERA+ IL TVK RAELAV+ELC TFSPE YGGIVEAFL+LEDRGAL P P
Sbjct:   50 EKDVARLAVTTQIASMVQENYAALVGGMRQVQAVDLDLARAGVQISNGRRGLQRSLARSTGPVLRLIETGRRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATAELLAETVAGDEQLSSAAVLGGVRERAENILATVKTRAELAVSELCQTFSPEAYGGIVEAFLLLEDRGALRPPP 234          
BLAST of mRNA_L-elsbetiae_contig728.16145.1 vs. uniprot
Match: A0A836CNI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.080e-23
Identity = 77/229 (33.62%), Postives = 109/229 (47.60%), Query Frame = 0
Query:   13 AGACDEYLERQLRDMDVARLAVTRQIASMVQENYAALVGGMRQ--------------------------------VQAVDLDLARAGVQISNGRRGLQRTVARSTGPVIRVVETVRRRDRLRLVETAVASCVEAMRAEGRVEGDLAAGRFTQAVATAELLSETMA--GDEKLSTLCVLGGVRERAKAILPTVKKRAELAVAELCITFSPEGYGGIVEAFLMLEDRGALS 207
            AG  D+Y+ER+LRD D+AR A+TR +A  +Q NYAAL  GM+Q                                VQAVD DL  AGVQ ++ RR L+    R +G +++ +    RR+R   +  A A+                 GRF  A+  A  L   +A  G   L  +  LGG+RER+  +LP V+ + E   A  C  FS   Y  +V A+++LE  GAL+
Sbjct:  383 AGLLDQYIERELRDKDLAREAITRALAGKIQANYAALAEGMKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQAVDSDLTTAGVQAASARRRLRNAADRGSGGILQALRLHTRRERGAALLAATAATXXXXXXXXXXXXXXXXGRFALAMDMAAELRRALAARGAGGLRDIAALGGLRERSAGVLPRVRAQVEATAAATCRRFSAAEYAVVVRAYVLLEAAGALA 611          
BLAST of mRNA_L-elsbetiae_contig728.16145.1 vs. uniprot
Match: A0A7S3GUK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUK3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 8.720e-5
Identity = 47/190 (24.74%), Postives = 92/190 (48.42%), Query Frame = 0
Query:   18 EYLER---QLRDMDVARLAVTRQIASMVQENYAALVGGMRQVQAVDLDLARAGVQISNGRRGLQRTVARSTGPVIRVVETVRRRDRLRLVETAVASCVEAMRAEGRVEGDLAAGRFTQAVATAELLSETMAGD--EKLSTLCVLGGVRERAKAILPTVKKRAELAVAELCIT-FSPEGYGGIVEAFLMLE 201
            E +ER   ++ + D  +  +   + +M+  NY  L+  MR VQ++D+DL RAG+QI +GR+ L+          I+V     +R ++  +   + S          +  ++  G   +A   A  + E +  D  +K   L  +G   ER+   + T++++++ A+  LC   FS   Y  I+ A+++L+
Sbjct:    4 EMIERFMDKIEEADTDKDVIIGHLTTMIDANYNDLMECMRNVQSIDMDLCRAGIQIGHGRQRLRSACDIIHSGAIKVKSLHTKRGKMSKMSETIRSLQAIKGIHQSMMININTGEVGKAANHAMSVLECLKHDSFDKFVALKSIGQSTERS---VITIRQKSDKALKRLCSRKFSALDYENILTAYILLD 190          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig728.16145.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3W7_ECTSI9.320e-9282.16Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CNI9_9STRA7.080e-2333.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3GUK3_9STRA8.720e-524.74Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019515Vacuolar protein sorting-associated protein 54, N-terminalPFAMPF10475Vps54_Ncoord: 15..203
e-value: 1.6E-13
score: 50.6
IPR040047SyndetinPANTHERPTHR13258UNCHARACTERIZEDcoord: 16..204
NoneNo IPR availablePANTHERPTHR13258:SF0SYNDETINcoord: 16..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig728contigL-elsbetiae_contig728:3224..9847 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig728.16145.1mRNA_L-elsbetiae_contig728.16145.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig728 3223..9847 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig728.16145.1 ID=prot_L-elsbetiae_contig728.16145.1|Name=mRNA_L-elsbetiae_contig728.16145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=275bp
GAVGVVAPGGETAGACDEYLERQLRDMDVARLAVTRQIASMVQENYAALV
GGMRQVQAVDLDLARAGVQISNGRRGLQRTVARSTGPVIRVVETVRRRDR
LRLVETAVASCVEAMRAEGRVEGDLAAGRFTQAVATAELLSETMAGDEKL
STLCVLGGVRERAKAILPTVKKRAELAVAELCITFSPEGYGGIVEAFLML
EDRGALSPRPPSPRGPHASSSSSLPAPPPAAPEARHRKEQERLAAAAAAG
KKGGLSTGMVVGAAGDGGVSGPGSG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019515VPS54_N
IPR040047VPS50