prot_L-elsbetiae_contig7257.16122.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig7257.16122.1
Unique Name	prot_L-elsbetiae_contig7257.16122.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	468

Homology

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BLAST of mRNA_L-elsbetiae_contig7257.16122.1 vs. uniprot
Match: A0A6H5KZ19_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ19_9PHAE)

HSP 1 Score: 554 bits (1428), Expect = 1.290e-191
Identity = 297/481 (61.75%), Postives = 350/481 (72.77%), Query Frame = 0

Query:    1 MLQATVPCPNGDECTSQFCPLRWKKHNEECPSTVVPCTHHAVGCGWKGARRGLSAHVDCCAYEQIKGLVPRVSASLKKVHTQVHHLEARLLSQNAALANTRAL-ALQRQPGSVFPAVYALLWRPPDWRRYNYPNPGV-VLSNVAFICLAPVLFLGLWGGGTFGGGSGLAAEERAACLAGVAILTFVLLLEYDNASPWHET------RGLAIGRVLLENTARLVVFCAINGLPPWKRLPAVVLLLAPLFYPPVVESLHRFQVEVKNAQTQAQRAHAQPPLPPFEPVVPSVIKVHTTVVNGVVRAVAMLVCGLEAVLVGEALAKLSVTLAAATSAGPAVDEALEYAWVSMSAGCAPGDLERLRTRHGRIFREMRSPLPTPTDRRSRRVMAVSCVFSVAACVSHYRDSLHTIGFGRLLLLVLGVAHFRWELQVERLVMATFKLTRTGRDP------ARCLLLSRLFLLWTVLGSLFFVLTILTS 467
            ML+ATV C NGD C +QFCPLRWKKH EECPS VV C HH VGC W+GARR LS HV+ CAYE+IKGL+PRVSASLK++HTQVH LEAR+++QNAA+ANTRAL A QRQ GSVFPAVYALLWRPP+WR Y  P PG  VLSNV  ICLAP+LFL L G G FGGG GL  EERA CL GVAIL FV LLE+DN SP+HE       +GLAIG  LLE TAR +V+ A+ GLP WKR PA++ LLAPLFYP VV+++HRF+V+VKNA  QAQRA AQPPLPP EPV    +K H TVVNGVVR   ML+      LVGE LAKL V + +A      +D  LE+ W+ MS+G A  D  RL+ RH  IFR++R+PLP  TDR +RR++A  CV   A  V+ +RD L  +G+ RLLL VL  AHFRWEL V R+VM + + TRT +DP      AR LL SRL LLW V+GS FF+L +LTS
Sbjct:  101 MLKATVTCRNGD-CAAQFCPLRWKKHQEECPSAVVQCMHHLVGCVWEGARRDLSLHVEGCAYEKIKGLIPRVSASLKQIHTQVHQLEARVMAQNAAVANTRALLAHQRQAGSVFPAVYALLWRPPNWRLYQSPRPGGGVLSNVTLICLAPILFLALCGAGVFGGGGGLVVEERAVCLVGVAILGFVALLEHDNESPYHELQTPSLLKGLAIGEFLLEGTARSMVYFALKGLPDWKRTPALLFLLAPLFYPTVVQAVHRFEVQVKNAHNQAQRARAQPPLPPVEPVA---VKTHGTVVNGVVRGTTMLLMNPVPALVGEVLAKLGVFVVSAALGPEKLDAFLEHVWLVMSSGIALDDKARLKKRHDSIFRDLRTPLPNMTDRTTRRLIAAVCVCLFAIIVAFFRDILQMVGYSRLLLSVLDSAHFRWELHVGRVVMGSLQQTRTNQDPNFARTRARDLLRSRLLLLWVVVGSSFFLLFMLTS 577

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7257.16122.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7257.16122.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5KZ19_9PHAE	1.290e-191	61.75	RING-type domain-containing protein n=2 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 248..268
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 170..189
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..135
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 396..400
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 136..158
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 190..377
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 159..169
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 401..420
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 378..395
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 441..465
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 421..440
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 466..467
None	No IPR available	TMHMM	TMhelix		coord: 443..465
None	No IPR available	TMHMM	TMhelix		coord: 135..157
None	No IPR available	TMHMM	TMhelix		coord: 172..189
IPR001293	Zinc finger, TRAF-type	PROSITE	PS50145	ZF_TRAF	coord: 26..65 score: 8.793
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 4..67

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7257	contig	L-elsbetiae_contig7257:1364..6852 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7257.16122.1	mRNA_L-elsbetiae_contig7257.16122.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig7257 886..7401 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig7257.16122.1 ID=prot_L-elsbetiae_contig7257.16122.1|Name=mRNA_L-elsbetiae_contig7257.16122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=468bp
MLQATVPCPNGDECTSQFCPLRWKKHNEECPSTVVPCTHHAVGCGWKGAR
RGLSAHVDCCAYEQIKGLVPRVSASLKKVHTQVHHLEARLLSQNAALANT
RALALQRQPGSVFPAVYALLWRPPDWRRYNYPNPGVVLSNVAFICLAPVL
FLGLWGGGTFGGGSGLAAEERAACLAGVAILTFVLLLEYDNASPWHETRG
LAIGRVLLENTARLVVFCAINGLPPWKRLPAVVLLLAPLFYPPVVESLHR
FQVEVKNAQTQAQRAHAQPPLPPFEPVVPSVIKVHTTVVNGVVRAVAMLV
CGLEAVLVGEALAKLSVTLAAATSAGPAVDEALEYAWVSMSAGCAPGDLE
RLRTRHGRIFREMRSPLPTPTDRRSRRVMAVSCVFSVAACVSHYRDSLHT
IGFGRLLLLVLGVAHFRWELQVERLVMATFKLTRTGRDPARCLLLSRLFL
LWTVLGSLFFVLTILTS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001293	Znf_TRAF
IPR008974	TRAF-like