prot_L-elsbetiae_contig7253.16118.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7253.16118.1
Unique Nameprot_L-elsbetiae_contig7253.16118.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length109
Homology
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BLAST of mRNA_L-elsbetiae_contig7253.16118.1 vs. uniprot
Match: A0A6H5L3E5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E5_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.480e-54
Identity = 91/102 (89.22%), Postives = 96/102 (94.12%), Query Frame = 0 
Query:    1 MRLSNEMPEFMVVASKYDEATTFPWRSEMHIQMAFMEEPGEPPRIYEGTLVGVKAKDPESDVMPWECLLVEWDDEPGMNTVNPWEVEAVSAATAAARRRAPG 102
            MRLSNEMPEF+VVASKYDEA TF WRSEMHIQMAFMEEPGEPPRI+EGTLVGVK KDP + +MPWECL+VEWDDE GMNTVNPWEVEAVSAATAAARRRAPG
Sbjct:  650 MRLSNEMPEFVVVASKYDEAMTFNWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLIVEWDDEAGMNTVNPWEVEAVSAATAAARRRAPG 751
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BLAST of mRNA_L-elsbetiae_contig7253.16118.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 3.820e-53
Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 0 
Query:    1 MRLSNEMPEFMVVASKYDEATTFPWRSEMHIQMAFMEEPGEPPRIYEGTLVGVKAKDPESDVMPWECLLVEWDDEPGMNTVNPWEVEAVSAATAAARRRAPG 102
            MRLSNEMPEF+VV SKYDEA TF WRSEMHIQMAFMEEPGEPPRI+EGTLVGVK KDP + +MPWECL+VEWDDE GMNTVNPWEVEAVSAATAAARRRAPG
Sbjct: 2063 MRLSNEMPEFVVVTSKYDEAMTFNWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLMVEWDDEAGMNTVNPWEVEAVSAATAAARRRAPG 2164
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7253.16118.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3E5_9PHAE2.480e-5489.22Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G6R7_ECTSI3.820e-5388.24Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010525Auxin response factorPFAMPF06507Auxin_respcoord: 6..68
e-value: 2.8E-7
score: 30.7
NoneNo IPR availableGENE3D2.30.30.1040coord: 25..96
e-value: 3.0E-8
score: 34.9
NoneNo IPR availablePANTHERPTHR31384FAMILY NOT NAMEDcoord: 8..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7253contigL-elsbetiae_contig7253:7779..8561 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7253.16118.1mRNA_L-elsbetiae_contig7253.16118.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7253 6417..8583 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7253.16118.1 ID=prot_L-elsbetiae_contig7253.16118.1|Name=mRNA_L-elsbetiae_contig7253.16118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MRLSNEMPEFMVVASKYDEATTFPWRSEMHIQMAFMEEPGEPPRIYEGTL
VGVKAKDPESDVMPWECLLVEWDDEPGMNTVNPWEVEAVSAATAAARRRA
PGTLAQQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010525Auxin_resp