prot_L-elsbetiae_contig723.16089.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig723.16089.1
Unique Nameprot_L-elsbetiae_contig723.16089.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length144
Homology
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BLAST of mRNA_L-elsbetiae_contig723.16089.1 vs. uniprot
Match: D8LGK4_ECTSI (alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.160e-15
Identity = 55/116 (47.41%), Postives = 64/116 (55.17%), Query Frame = 0 
Query:    1 MPLYHQRL---SRPAPSRRRRXXXXXXXXX-----GSTCCNPWTILLVSPLVLMAFGLGTFFGIELAQTPGGRGTGLHAGASAPGGNYMPTLEHPTE----GAGAKWANNGNFAAP 104
            +PLYHQ     SR   +RRRR              GS C   W++L+V  LV +AFGLGTF GIELAQ PGG GT LH G  AP G++MP LEHP+     G GA   N     AP
Sbjct:    9 IPLYHQNKLGGSRAWSTRRRRSGAGGSSKSKRNVGGSLC---WSVLVVGTLVFVAFGLGTFTGIELAQAPGGSGTSLHNGNHAPRGSFMPNLEHPSGQEQVGGGAGGRNKREKPAP 121
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig723.16089.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGK4_ECTSI1.160e-1547.41alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=287... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 57..144
NoneNo IPR availableTMHMMTMhelixcoord: 34..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig723contigL-elsbetiae_contig723:25491..30338 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig723.16089.1mRNA_L-elsbetiae_contig723.16089.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig723 25491..30338 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig723.16089.1 ID=prot_L-elsbetiae_contig723.16089.1|Name=mRNA_L-elsbetiae_contig723.16089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MPLYHQRLSRPAPSRRRRASTPKKRNGGSTCCNPWTILLVSPLVLMAFGL
GTFFGIELAQTPGGRGTGLHAGASAPGGNYMPTLEHPTEGAGAKWANNGN
FAAPPHRPPQHEPRAPRPTPQGFGAHDQAAQHQPEPATAGVGHG
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