prot_L-elsbetiae_contig72.16038.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig72.16038.1
Unique Nameprot_L-elsbetiae_contig72.16038.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length304
Homology
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BLAST of mRNA_L-elsbetiae_contig72.16038.1 vs. uniprot
Match: D7FTY6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY6_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 9.110e-104
Identity = 187/302 (61.92%), Postives = 220/302 (72.85%), Query Frame = 0 
Query:    2 VRLKSSLTLEATHKRLHGALDTFNSQMMVKPPLPVAPVAGSPPHAVASVDGHST-KAEGDALRSRRQLLSKYASLFRLVAVSYQDGTPAGRQAAEELDASDCGLDDSDVYGLMEVVRSCPCLAVLDLSMNYIGDAGAASLAGVLRQASCGLRRVDLRSNQMSMEGVRMLAKALEDSGSRGVAHVYVHSEGRIDALGRKKERNAYEASQVPPXXXPGQNPLGLFFSVVMVDARDNKPRTTGSPSTAALPTASRGKRRLGGLALANSVTDNKNKPPPKSTTNAEYSALVARQSQVRDYMTKVAY 302
            VRLKSSLT+E THKRL+ ALD FNSQM  KPPLP A   G+ PH  A   G ST + +GDALR RRQLLS + +LF LVA    DGT A R A  ELD SDCGLDD DV+G+ME+  SCP L VL+LSMNYIGDAGAASLA VLR ASCGLRR+DL  NQMSMEGVR+LAKALE++ SRGV+HVYVHSEGRIDALGR+KE       +        Q+ LG+FFSVV+VDARDN P+  G+P TA LP A RGKR++G +A A  +  +K K          +++L+ARQSQVRD+MTKVAY
Sbjct:  297 VRLKSSLTVETTHKRLYAALDKFNSQM-TKPPLPAANGGGNLPHDEALAIGPSTQRIKGDALRCRRQLLSNHMALFGLVA-GRDDGTSA-RHALNELDLSDCGLDDFDVHGVMELACSCPRLEVLNLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGVRVLAKALEENCSRGVSHVYVHSEGRIDALGREKEDKCQSVKERNSVPDEEQDALGMFFSVVIVDARDNHPQPAGNPDTA-LPLARRGKRQIGHIAAARGLIGSKKKGSGIKPERNSHNSLLARQSQVRDFMTKVAY 594
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BLAST of mRNA_L-elsbetiae_contig72.16038.1 vs. uniprot
Match: A0A835Z915_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z915_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.680e-26
Identity = 96/285 (33.68%), Postives = 135/285 (47.37%), Query Frame = 0 
Query:    3 RLKSSLTLEATHKRLHGALDTFNSQMMVKPPLPVAPVAGSPPHA-------------VASVDGHSTKAEGDALR----SRRQLLSKYASLFRLVAVSYQDGTPAGRQAAEELDA----------------------SDCGLDDSDVYGLMEVVR------SCPCLAVLDLSMNYIGDAGAASLAGVLRQASCGLRRVDLRSNQMSMEGVRMLAKALEDSGSRGVAHVYVHSEGRIDALGRKKERNAYEASQVPPXXXPGQNPLG--LFFSVVMVDARDNKPRTTG 240
            +L+S+ ++EAT +RLH ALD FN+QM        AP  G                  VA + G  T +   AL+    S+RQ+LS +       A +           A + D+                       +CG+ DSD+  + + +       + P L V DLS N+I D GA+ LA VLR   C ++R+DLR NQ++MEGVR LA+ALE     G++HVYVH+EGRIDALG ++ +     S         Q PLG     S+ +VD RDN     G
Sbjct:  375 QLRSAASMEATQRRLHRALDKFNTQM--------APGVGGXXXXXXXXXXXXXXXXFVADMAGGVTASAWTALQQQTWSKRQMLSLFVQHAAATAAASAANAVVPDSGACDADSPASFKMERSGAGGTPSELLIPLGNCGIVDSDIDCVADTLARVAEYTALPPLMV-DLSANFITDTGASQLAAVLRLDGCKVKRLDLRYNQVTMEGVRALARALESCTHHGISHVYVHAEGRIDALGVQQPQCTTGGSSTDAAATE-QQPLGPDSLVSIAVVDVRDNASSPAG 649
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BLAST of mRNA_L-elsbetiae_contig72.16038.1 vs. uniprot
Match: UPI0009A3AE0F (NLR family member X1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A3AE0F)

HSP 1 Score: 55.5 bits (132), Expect = 1.210e-5
Identity = 37/120 (30.83%), Postives = 60/120 (50.00%), Query Frame = 0 
Query:   60 DALRSRRQL-LSKYASLFRLVAVSYQDGTPAGRQAAEELDASDCGLDDSDVYGLMEVVRSCPCLAVLDLSMNYIGDAGAASLAGVLRQASCGLRRVDLRSNQMSMEGVRMLAKALEDSGS 178
            D L SR  +  +KY   F +        T    +  EE D S C L D DV  L+ V+        + L+ N IG+ G   L+ VL ++ C + R++L+SN ++ +G+ ML  +L+ + S
Sbjct:   54 DVLASRNSIQFTKYP--FNISDCVILPSTLMAIEQLEEXDLSCCSLQDEDVPFLLPVLHK---YKTVRLNQNQIGNTGVKRLSEVLMRSDCEITRLELKSNNLTDDGLGMLISSLQSNSS 168
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig72.16038.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTY6_ECTSI9.110e-10461.92Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835Z915_9STRA1.680e-2633.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI0009A3AE0F1.210e-530.83NLR family member X1-like n=1 Tax=Rhincodon typus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 148..175
e-value: 0.037
score: 23.2
coord: 119..146
e-value: 0.23
score: 20.5
NoneNo IPR availablePANTHERPTHR24106FAMILY NOT NAMEDcoord: 92..184
coord: 64..172
NoneNo IPR availablePANTHERPTHR24106:SF250LEUCINE-RICH REPEAT-CONTAINING PROTEIN AAC1coord: 92..184
coord: 64..172
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 95..174
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 73..189
e-value: 3.6E-19
score: 70.6
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 118..141
e-value: 0.0045
score: 16.9
coord: 148..170
e-value: 0.32
score: 11.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig72contigL-elsbetiae_contig72:44134..49175 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig72.16038.1mRNA_L-elsbetiae_contig72.16038.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig72 44134..49175 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig72.16038.1 ID=prot_L-elsbetiae_contig72.16038.1|Name=mRNA_L-elsbetiae_contig72.16038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=304bp
TVRLKSSLTLEATHKRLHGALDTFNSQMMVKPPLPVAPVAGSPPHAVASV
DGHSTKAEGDALRSRRQLLSKYASLFRLVAVSYQDGTPAGRQAAEELDAS
DCGLDDSDVYGLMEVVRSCPCLAVLDLSMNYIGDAGAASLAGVLRQASCG
LRRVDLRSNQMSMEGVRMLAKALEDSGSRGVAHVYVHSEGRIDALGRKKE
RNAYEASQVPPPPPPGQNPLGLFFSVVMVDARDNKPRTTGSPSTAALPTA
SRGKRRLGGLALANSVTDNKNKPPPKSTTNAEYSALVARQSQVRDYMTKV
AYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt