prot_L-elsbetiae_contig7197.16033.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7197.16033.1
Unique Nameprot_L-elsbetiae_contig7197.16033.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length591
Homology
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BLAST of mRNA_L-elsbetiae_contig7197.16033.1 vs. uniprot
Match: D7FWY9_ECTSI (N2,N2-dimethylguanosine tRNA methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY9_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 3.020e-29
Identity = 140/328 (42.68%), Postives = 158/328 (48.17%), Query Frame = 0 
Query:   10 KKKGRRQYRASVADRPYAKEAAIRVLLHRLDVLARRRGRRVSPLLCVALDFYVRLFVVIMPA----AKGGDTDLXXXXXXXLV-VNQRVGTPEFFCDRGN---LNLCGAARPCSPGDREGRGGAGEDDCCGEKSRSGLRNGSDAKNVNNGPENDPKVKISARANDPKMQNGPEXXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPE---DGLGG-----------------GRGRRVCSSPPPPGVEAVREQLRSAGHECSGSHADPRALKTRAPLAAVEDAISRAAAEQ 309
            KK+   QYRASV DRPYAKEAAIRVLLHR+D LARR GRRVSPLLCVALDFYVRLFV+I+PA    A G  T L       ++ V+Q   +  F C   N   L+          GD +                SG   GS    ++   END      + AN      GP        XXXXXXXXXXXXXXXXX                                             PE   +G GG                 G GR V    P P VEAVREQLRSAGHECSGSHADPRA+KT+APL AV +AI RA AE+
Sbjct:   19 KKRCLSQYRASVVDRPYAKEAAIRVLLHRIDKLARRGGRRVSPLLCVALDFYVRLFVLILPAPDEDADGVSTPLEKRAPPPVLWVDQARESSRFRCYNSNNRTLDXXXXXXXXXSGDGD----------------SGXXXGSTRPPIHRRSEND------SGANPGDGVPGPSSIGKGSAXXXXXXXXXXXXXXXXXEDARSDTWAAAAADSDAVIMARQQSCFPEVHTKGDKRNGAGMWNGPEMERNGSGGHERGPEEATRRGLRGSGGGGRGVGC--PLPSVEAVREQLRSAGHECSGSHADPRAIKTKAPLEAVREAIFRARAEK 322
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BLAST of mRNA_L-elsbetiae_contig7197.16033.1 vs. uniprot
Match: A0A6H5KQY5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.040e-8
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:  270 EQLRSAGHECSGSHADPRALKTRAPLAAVEDAISRAAAEQ---INALAETGVHGSC 322
            EQLRSAGHECSGSHADPRA+KT+APL AV +AI RA AE+   I  L   G   +C
Sbjct:    2 EQLRSAGHECSGSHADPRAIKTKAPLEAVREAIFRAGAEKDATIKVLYTKGDRSNC 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7197.16033.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWY9_ECTSI3.020e-2942.68N2,N2-dimethylguanosine tRNA methyltransferase n=1... [more]
A0A6H5KQY5_9PHAE3.040e-864.29Reverse transcriptase domain-containing protein (F... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002905tRNA methyltransferase, Trm1PFAMPF02005TRMcoord: 263..302
e-value: 1.8E-4
score: 20.8
coord: 9..73
e-value: 7.4E-9
score: 35.2
IPR002905tRNA methyltransferase, Trm1PROSITEPS51626SAM_MT_TRM1coord: 1..302
score: 17.325
NoneNo IPR availableGENE3D3.40.50.150coord: 4..77
e-value: 1.3E-11
score: 45.8
NoneNo IPR availablePANTHERPTHR23202WASP INTERACTING PROTEIN-RELATEDcoord: 51..448
NoneNo IPR availablePANTHERPTHR23202:SF27VERPROLIN 1, ISOFORM Gcoord: 379..586
NoneNo IPR availablePANTHERPTHR23202WASP INTERACTING PROTEIN-RELATEDcoord: 379..586
NoneNo IPR availablePANTHERPTHR23202:SF27VERPROLIN 1, ISOFORM Gcoord: 51..448
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 350..369
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 73..317
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 370..591
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 318..338
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 339..349
NoneNo IPR availableTMHMMTMhelixcoord: 50..72
IPR042296tRNA methyltransferase, Trm1, C-terminalGENE3D3.30.56.70coord: 254..305
e-value: 3.8E-6
score: 28.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7197contigL-elsbetiae_contig7197:1308..7015 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7197.16033.1mRNA_L-elsbetiae_contig7197.16033.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7197 1308..7015 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7197.16033.1 ID=prot_L-elsbetiae_contig7197.16033.1|Name=mRNA_L-elsbetiae_contig7197.16033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=591bp
MIRRCHLRQKKKGRRQYRASVADRPYAKEAAIRVLLHRLDVLARRRGRRV
SPLLCVALDFYVRLFVVIMPAAKGGDTDLLPPPPPPLVVNQRVGTPEFFC
DRGNLNLCGAARPCSPGDREGRGGAGEDDCCGEKSRSGLRNGSDAKNVNN
GPENDPKVKISARANDPKMQNGPENDLQMENGPENDLKMQNGPENDLKMQ
NGPENDLKMENGPENDLQMQNGPENDLRIENGPENDPEIQSGLPEDGLGG
GRGRRVCSSPPPPGVEAVREQLRSAGHECSGSHADPRALKTRAPLAAVED
AISRAAAEQINALAETGVHGSCVFFFFHSGVFGGVLFWRCRSVGRAQYTA
VMLCACLGHALRLSLFLPLSQAAIGIWGGAHHPHHQQQQTGSLQAARARM
AAAAAAAAAAAAAAAADPDLAASLSHGWSASERGGGGGSGAAAAALGGSV
RASPPPPPPPPLPLTSGDEGTALPPLPATREAAASAAAPAPAPAPETLAK
AGPHVSAGRVGVEAARSQGGRRGFPHLTMASLQGFVEESLASCSTGDVTG
SGGGSGGGGGRSNAGSNNNSNNHLGGKCSSSGASRASGASR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002905Trm1
IPR042296tRNA_met_Trm1_C