prot_L-elsbetiae_contig7170.16004.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig7170.16004.1
Unique Name	prot_L-elsbetiae_contig7170.16004.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	181

Homology

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BLAST of mRNA_L-elsbetiae_contig7170.16004.1 vs. uniprot
Match: D7FZ53_ECTSI (Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ53_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.480e-55
Identity = 117/196 (59.69%), Postives = 141/196 (71.94%), Query Frame = 0

Query:    1 MLRVALSAVAPRVAVANKSILPAA--RRSTLTALAS------------SHQGGRSLALDCVASAATASRSIAARKCPCRDMSSASAKLAAPGSVDSSATPGAGSGDGQSEGEMGSGGD-ARDPLTGEGIWMDEEDEPLVLEKPKKIQKFCGKVISDNMDKTIKVAIPHWYYVRKLGRRIVRYSKIMAHDEGNTANV 181
            MLR  L+ +APR   A++S   +   R +  TA A+            S QGG+SL LDC A  A   RS+  R+C  R+MSSASA +AAPG  D  A  G G G+GQ +GEMGS G  ARDP+TGEGIW+DEEDEPL LEKPKK+QKFCGKVISDNMDKTIKVA+P+WYYVR+LG+RI+RYSK+MAHDE N+ANV
Sbjct:    1 MLRTVLATIAPRATAASRSRAASGPGRCAPFTAFATRRPSPSPSRFSPSPQGGQSLPLDCAA--AVTIRSVP-RRCSWREMSSASAHVAAPGGGDL-AMQGEGGGEGQ-QGEMGSSGRYARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANV 191

[Close]

BLAST of mRNA_L-elsbetiae_contig7170.16004.1 vs. uniprot
Match: A0A8J5XMV1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XMV1_DIALT)

HSP 1 Score: 51.6 bits (122), Expect = 1.080e-5
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 0

Query:  133 KFCGKVISDNMDKTIKVAIPHWYYVRKLGRRIVRYSKIMAHDE 175
            K  G+VIS  M +++ V +P+W+ V++L  RIVR++K+MAHDE
Sbjct:    5 KLIGQVISAKMQQSVVVKVPYWHVVQRLQMRIVRHTKLMAHDE 47

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7170.16004.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7170.16004.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FZ53_ECTSI	1.480e-55	59.69	Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=287...	[more]
A0A8J5XMV1_DIALT	1.080e-5	48.84	Uncharacterized protein n=1 Tax=Diacronema lutheri...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 136..181 e-value: 1.1E-10 score: 41.4
None	No IPR available	GENE3D	2.40.50.140		coord: 128..181 e-value: 1.0E-11 score: 46.4
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 17..181
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..11
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PRODOM	PD001295		coord: 134..181 e-value: 2.0E-4 score: 105.0
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 132..180

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7170	contig	L-elsbetiae_contig7170:7069..9369 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7170.16004.1	mRNA_L-elsbetiae_contig7170.16004.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig7170 7069..9369 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig7170.16004.1 ID=prot_L-elsbetiae_contig7170.16004.1|Name=mRNA_L-elsbetiae_contig7170.16004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MLRVALSAVAPRVAVANKSILPAARRSTLTALASSHQGGRSLALDCVASA
ATASRSIAARKCPCRDMSSASAKLAAPGSVDSSATPGAGSGDGQSEGEMG
SGGDARDPLTGEGIWMDEEDEPLVLEKPKKIQKFCGKVISDNMDKTIKVA
IPHWYYVRKLGRRIVRYSKIMAHDEGNTANV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000266	Ribosomal_S17/S11
IPR012340	NA-bd_OB-fold