prot_L-elsbetiae_contig7088.15891.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7088.15891.1
Unique Nameprot_L-elsbetiae_contig7088.15891.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length113
Homology
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BLAST of mRNA_L-elsbetiae_contig7088.15891.1 vs. uniprot
Match: D7FM73_ECTSI (Fibronectin type-III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM73_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 7.720e-54
Identity = 87/112 (77.68%), Postives = 91/112 (81.25%), Query Frame = 0 
Query:    1 MSVPQLQFKGCELDAITLSWEGVEGAGYKLEFREILVPDWAGCRSETIAPAAPSPSAEISVTVGDLNPSSCYIFRLYTVAADGHEVGPGPEIAFDTEVVSCAPTNKSFCTVS 112
            M+VPQLQFK CELD+ITLSWE  EG GYKLEFREILV DWAGCRS  IAP   S S E+S  V  LNPSS YIFRLYTV A G EVGPGPEIAFDTEVVSCAPTNKS CT+S
Sbjct:    1 MAVPQLQFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSS-STEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCCTIS 111
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BLAST of mRNA_L-elsbetiae_contig7088.15891.1 vs. uniprot
Match: A0A835YPU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.710e-25
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 0 
Query:    3 VPQLQFKGCELDAITLSWEGVEGAGYKLEFREILVPDWAGCRSETIAPAAPSPSAEISVTVGDLNPSSCYIFRLYTVAADGHEVGPGPEIAFDTEVVSCAPTNKSFC 109
            +P L+F+ C+L+++TL W G  G  YKLEFR++    W    S  I P   S +   +V V DL PS  YIFRL+ + A G   GPGP+ AFDTEVVSC PT++S C
Sbjct:    8 LPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPP---SQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVC 111
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7088.15891.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM73_ECTSI7.720e-5477.68Fibronectin type-III domain-containing protein n=2... [more]
A0A835YPU1_9STRA2.710e-2547.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 3..107
e-value: 1.2E-5
score: 27.1
IPR036116Fibronectin type III superfamilySUPERFAMILY49265Fibronectin type IIIcoord: 4..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7088contigL-elsbetiae_contig7088:3739..6879 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7088.15891.1mRNA_L-elsbetiae_contig7088.15891.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7088 3693..8258 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7088.15891.1 ID=prot_L-elsbetiae_contig7088.15891.1|Name=mRNA_L-elsbetiae_contig7088.15891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MSVPQLQFKGCELDAITLSWEGVEGAGYKLEFREILVPDWAGCRSETIAP
AAPSPSAEISVTVGDLNPSSCYIFRLYTVAADGHEVGPGPEIAFDTEVVS
CAPTNKSFCTVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR036116FN3_sf