prot_L-elsbetiae_contig707.15876.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig707.15876.1
Unique Nameprot_L-elsbetiae_contig707.15876.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length349
Homology
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE)

HSP 1 Score: 367 bits (942), Expect = 1.820e-121
Identity = 224/350 (64.00%), Postives = 260/350 (74.29%), Query Frame = 0
Query:    3 MVHSSRLRPRPLSWRVGSARFLLSAVSAIVRGGLHNA-NAYTLP-WVGHPRSIASDSP-------AARDTFARTCQSRFLPSPFL---IDGDCCCVAGSGHERSAGGSRGRRSRPSPSVGALAAVGSAVDVSSSGGG-PAVVDEAAIGRKA-KQQMRAMTRGLNSITAYAAYGAREKAGRKKSGLTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGR 338
            M   SRLRPRP SW VGSARFLLS V+AIVR GLH A +A+TLP   G P    S S        A     AR  QSR     +    + G+    A  GH+R  GG R R    S  +GA+    S V V   G   PA++  +A  RKA KQ++RAMTRGLNSIT++AAYG+RE  GR    +TMAEEI+LVE +K+L+RYLK REQL+A LGGREPTREEWA+SL IST+ELA QMM S++AQE+IVEANVGLI +MARRHHPATMA+GTITSDVIQEGSLA+LRAAETF+P+LGYRFSTYAGWWVRDRVTRCVTQQ RIIRLPQYVHNFRRTAS+T++ALLKELGR
Sbjct:    1 MSSRSRLRPRPRSWFVGSARFLLS-VAAIVRSGLHIATDAFTLPSGAGRPPRNGSASERLLLEVEAETAPPARNPQSRPTSDAWCARSVAGNALRCACPGHDRQPGGRRHRGF--SSRLGAVGTAPSEVVVGLGGAARPALLGASARARKASKQEVRAMTRGLNSITSFAAYGSRETPGR----MTMAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMMASARAQERIVEANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGR 343          
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 4.090e-118
Identity = 224/355 (63.10%), Postives = 264/355 (74.37%), Query Frame = 0
Query:    3 MVHSSRLRPRPLSWRVGSARFLLSAVSAIVRGGLHNA-NAYTLP-WVGHP--------RSIASDSPAARDTFARTCQSRFLPSPFL---IDGDCCCVAGSGHERSAGGSRGRRSRPSPSVGALAAVGSAVD---VSSSGG--GPAVVDEAAIGRKAK-QQMRAMTRGLNSITAYAAYGAREKAGRKKSGLTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGR 338
            M   SRLRPRP SW  GSARFLLS V+AIVR GLH A +A+TLP   GHP        R +  +  A   T AR  QSR     +    + G+    A  GH+R     RGRR R   S   L AVG+A     V   GG  GPAV+  +A  RKA  Q++RA+TRGLNSIT++AAYG+R+ AGR    +T+AEEI+LVE +K+L+RYLK REQL+A LGGREPTREEWA+SL IST+ELA QM+ S++AQE+IV ANVGLI +MARRHHPATMA+GTITSDVIQEGSLA+LRAAETF+P+LGYRFSTYAGWWVRDRVTRCVTQQ RIIRLPQYVHNFRRTAS+T++ALLKELGR
Sbjct:    1 MSSRSRLRPRPRSWCSGSARFLLS-VAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLP---RGRRHRGCSSR--LGAVGTAAPSEVVVGVGGAAGPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYGSRDTAGR----MTIAEEILLVEEVKILARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGR 345          
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: K9Y6K9_HALP7 (RNA polymerase, sigma 70 subunit, RpoD subfamily n=5 Tax=Cyanobacteria TaxID=1117 RepID=K9Y6K9_HALP7)

HSP 1 Score: 123 bits (309), Expect = 6.780e-29
Identity = 66/172 (38.37%), Postives = 102/172 (59.30%), Query Frame = 0
Query:  173 LTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTE 344
            LT  +EI+L + ++ + + ++ +E+L+  LG RE T EEW    GIS +EL   M + ++A+ K++EAN+ L+  +A+++    M       D+IQEG+L L R  E F+P  GY+FSTYA WW+R  +TR + QQ R IRLP ++             L ++LGR  T TE
Sbjct:   33 LTHEQEIILGKQVQKMMKLIEQKEELEEELG-REATDEEWTQKAGISQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNME----FLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELAQKLGRNATPTE 199          
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.180e-28
Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 0
Query:  177 EEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTE 344
            EE+ L  HI++   +  A+E+L   L  R+P+R EWA+ +G+  D L L M+ SS+A+  ++ AN+ L   +A+R+      +G   SD++QEGS  L++AAE F+P  G++FSTYA WW++  + R +  Q R IRLP +VH+   +       L  ELGRT T  E
Sbjct:   75 EEVTLGRHIQLGLEWEAAKEELAVRLE-RQPSRAEWAAHMGVDEDTLKLIMIRSSRAKTTMISANLRLAVSIAKRYKH----RGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEE 237          
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: UPI001685CB82 (RNA polymerase sigma factor, RpoD/SigA family n=5 Tax=Oscillatoriales TaxID=1150 RepID=UPI001685CB82)

HSP 1 Score: 121 bits (304), Expect = 3.940e-28
Identity = 66/172 (38.37%), Postives = 104/172 (60.47%), Query Frame = 0
Query:  173 LTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTE 344
            LT  EEIVL + ++ +  +++A+E L A L  REP ++EWAS + IS  EL+  ++   +A++K++EAN+ L+  +A+++    +       D+IQEG+L L R  E F+P  GY+FSTYA WW+R  +TR + QQ R IRLP ++             L ++LGR+ T  E
Sbjct:   40 LTHEEEIVLGKQVQQMMAFVEAKEALSAKLN-REPNQQEWASHVEISEAELSRILLVGQRAKQKMIEANLRLVVAIAKKYQKRNLE----LLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQQLGRSATPAE 206          
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: UPI0019F0A41F (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Geminocystis sp. M7585_C2015_104 TaxID=2774334 RepID=UPI0019F0A41F)

HSP 1 Score: 121 bits (303), Expect = 4.020e-28
Identity = 75/201 (37.31%), Postives = 114/201 (56.72%), Query Frame = 0
Query:  144 MRAMTRGLNSITAYAAYGAREKAGRKKSGLTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTE 344
            M+A+T+ +++I  Y      ++ GR    L+  EEI+L + I+ L    K RE+LK  LG REPTR EWA +  IS  EL  ++    +A+ K+VEAN+ L+  +A+++    +       D+IQEG++ + R  E F+P  GYRFSTYA WW+R  +TR + ++ R IRLP ++         T   L +E GR  T  E
Sbjct:    1 MQAVTKNIDTIRVYL-----KEIGRIPL-LSKEEEILLAKDIQQLVALEKKREKLKKELG-REPTRSEWAQAAKISEKELEQKISKGERAKRKMVEANLRLVVSIAKKY----VKNNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATLAE 190          
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: UPI001689130F (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI001689130F)

HSP 1 Score: 121 bits (303), Expect = 4.700e-28
Identity = 64/166 (38.55%), Postives = 101/166 (60.84%), Query Frame = 0
Query:  173 LTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGR 338
            LT  +EIV  + ++ +   L+ARE+L   L  REPTREEWA+ +G++  +L  ++ + ++A++K++EAN+ L+  +A+++    M       D+IQEG+L L R  E F+P  GY+FSTYA WW+R  +TR + QQ R IRLP ++             L + LGR
Sbjct:   32 LTHEQEIVYGKQVQQMMPLLEAREKLMEQLD-REPTREEWAAKVGLTEADLNKRLREGNRAKQKMIEANLRLVVAIAKKYQKRNME----FLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQSLGR 192          
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: A0A6U3P0N0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3P0N0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.660e-28
Identity = 75/197 (38.07%), Postives = 109/197 (55.33%), Query Frame = 0
Query:  163 REKAGRKKSG-----LTMAEEIVLVEHIKVLSRYLKAREQLKAGL---GGR---EPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAK--------GTITS--DVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGR 338
            R K   K+S      LT  EE+ L   I+ L   ++ R+ L A L   GG    EP   +WA +  +S  +L   +    +A+ ++V ANVGLI  +ARRH+ A            GTI +  D++QEG+L L+ AAE F+P  G+RFSTYA WW+R R+ + +    R+IRLP +VH+  RT + T   + KE+GR
Sbjct:  144 RTKKSTKESSSRSDLLTREEEVELTSAIRTLKSVVRIRDDLGAELSIDGGATMGEPLEADWAEACSLSVAQLRRTLHFGQEARTRLVSANVGLIMNIARRHYYALKRSVHSGKGGIGTILTLQDMVQEGNLGLMEAAERFDPARGFRFSTYAAWWIRQRILQSIADYSRVIRLPVHVHSTLRTINRTRKEMEKEIGR 340          
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.710e-28
Identity = 65/172 (37.79%), Postives = 105/172 (61.05%), Query Frame = 0
Query:  173 LTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTE 344
            LT  EE++L  H+++L ++ + RE+L+  L  R PT  EWA+++G+ T +L  Q+  S +A+  ++E+N+ L+  +A+R+   T        D+ QEGSL L++A E F+P+ G+RFSTYA WW++  V R +  Q R IRLP ++H+   T       L  +LGR  T+ E
Sbjct:  187 LTAQEEVLLARHVQLLLKWEEVRERLEIELA-RPPTYAEWAAAVGVDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNTLSV--QDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEE 355          
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: A0A6P0K2K6_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Kamptonema sp. SIO4C4 TaxID=2607773 RepID=A0A6P0K2K6_9CYAN)

HSP 1 Score: 120 bits (302), Expect = 6.780e-28
Identity = 67/175 (38.29%), Postives = 103/175 (58.86%), Query Frame = 0
Query:  173 LTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTESPA 347
            L+  +EIV  + ++ +   L+ARE L+  L  REP+ +EWA  +G+S + L  Q+ +  QA++K++EAN+ L+  +A+++    M       D+IQEG+L L R  E F+P  GY+FSTYA WW+R  +TR + QQ R IRLP ++         T   L ++ GRT T  E  A
Sbjct:   34 LSHEQEIVYGKKVQTMMPLLEARETLQEELQ-REPSCQEWADHVGLSREALKTQIREGKQAKKKMIEANLRLVVAIAKKYQKRNME----FLDLIQEGTLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKTQRELSQQFGRTATPKEIAA 203          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNQ9_9PHAE1.820e-12164.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLA7_ECTSI4.090e-11863.10RNA polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
K9Y6K9_HALP76.780e-2938.37RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
A0A835ZES3_9STRA2.180e-2839.29RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
UPI001685CB823.940e-2838.37RNA polymerase sigma factor, RpoD/SigA family n=5 ... [more]
UPI0019F0A41F4.020e-2837.31RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI001689130F4.700e-2838.55RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A6U3P0N0_9STRA5.660e-2838.07Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1B782_9STRA5.710e-2837.79Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6P0K2K6_9CYAN6.780e-2838.29RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 238..309
e-value: 8.5E-10
score: 38.3
NoneNo IPR availableGENE3D1.10.601.10coord: 133..313
e-value: 2.6E-25
score: 91.7
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 168..343
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..348
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 33..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 23..32
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 171..310

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig707contigL-elsbetiae_contig707:26579..31483 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig707.15876.1mRNA_L-elsbetiae_contig707.15876.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig707 26567..32049 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig707.15876.1 ID=prot_L-elsbetiae_contig707.15876.1|Name=mRNA_L-elsbetiae_contig707.15876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=349bp
MAMVHSSRLRPRPLSWRVGSARFLLSAVSAIVRGGLHNANAYTLPWVGHP
RSIASDSPAARDTFARTCQSRFLPSPFLIDGDCCCVAGSGHERSAGGSRG
RRSRPSPSVGALAAVGSAVDVSSSGGGPAVVDEAAIGRKAKQQMRAMTRG
LNSITAYAAYGAREKAGRKKSGLTMAEEIVLVEHIKVLSRYLKAREQLKA
GLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMAR
RHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDR
VTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTESPAC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007627RNA_pol_sigma70_r2
IPR013325RNA_pol_sigma_r2