prot_L-elsbetiae_contig7.15783.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig7.15783.1
Unique Name	prot_L-elsbetiae_contig7.15783.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	108

Homology

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BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.470e-19
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 0

Query:    1 MYYPSKRAKYGRYTNERRLVRALGFSYILMEICGWSAAAALGKQRAASVVASLGPLLASLTIISATFFGWQLKGVHDLSNMGRDIRLVVGFLL 93
            MYYPS RAKYGR T E+     L  +Y+L+E+  W AAA  G +R A V+ +L PL A +T+++    G QLK +HDLSNMGRDIRLV   LL
Sbjct:   99 MYYPSTRAKYGRVTREKPWACGLAATYLLVEMVVWLAAAMQGTKRVAVVMTNLAPLSAFVTLMAVVCLGRQLKRIHDLSNMGRDIRLVGIILL 191

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JIZ3_9PHAE	6.470e-19	52.69	RGS domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 42..46
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..41
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 47..70
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 71..107
None	No IPR available	TMHMM	TMhelix		coord: 19..41
None	No IPR available	TMHMM	TMhelix		coord: 46..68

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7	contig	L-elsbetiae_contig7:5008..5946 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7.15783.1	mRNA_L-elsbetiae_contig7.15783.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig7 4981..5978 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig7.15783.1 ID=prot_L-elsbetiae_contig7.15783.1|Name=mRNA_L-elsbetiae_contig7.15783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MYYPSKRAKYGRYTNERRLVRALGFSYILMEICGWSAAAALGKQRAASVV
ASLGPLLASLTIISATFFGWQLKGVHDLSNMGRDIRLVVGFLLASFRKQS
DHLVMCS*