prot_L-elsbetiae_contig6969.15743.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6969.15743.1
Unique Nameprot_L-elsbetiae_contig6969.15743.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length637
Homology
BLAST of mRNA_L-elsbetiae_contig6969.15743.1 vs. uniprot
Match: A0A6H5JKX1_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX1_9PHAE)

HSP 1 Score: 488 bits (1255), Expect = 9.770e-159
Identity = 292/493 (59.23%), Postives = 316/493 (64.10%), Query Frame = 0
Query:  159 LQLLPGTVLLQPGDPIEFWHAQGLVLGNYESPVPGRQSLVVRAETGEQLTIDAGQIVGVWREDEMSGRLPRS-ISEG-----------SXXXXXXXXXAVAAWAEIREEMRVLLQSTPARGLDLGPFWKAASSRGKGLVATPAHAAEFLFGAGSPEKLGLRKRPPFQFRDPGIAFQPSAVERAAAAQVLSGERSRFKRIVSKRLGGXXXXXXXXXXXXXXXXXXXXXXXXXEGGLPVEGVDAGXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXXEPVLISVGGFKAVDHSVAVTREVADFCRVVAGIKRAAAXXXXXXXXXXXXXXXGVEEEGTGSVLARAGLFEPAFLLILHSLEAFAIGGDEQALNPEAKRVMMEIAGKVNPAAAKSILVDVGLWTSRRQ--DGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEVGEGSGVLPWSAEALQAAAALGKEQARRLANYGKREPQGNVGMPAPFGR 637
            L+LLPGTV+LQPGDPIEFWHAQGLVLGNYESPVPGRQSL+VR E GE LTIDAGQIVGVWREDEMSG LP   ++ G           S  XXXXX   VA WAE+RE++R LLQ  PARGLD+G FW+AASSRGKG V TPAHAAEFLFGA SP KLGLRKRPPFQFR PG AF+PSAVERAAAAQVL+GERSRFKR+VSKRLG                          EG + V   D G                +                +PVLISVGGFKAVD SVAVTREVADFCRVV  +KRAAA                 EE G GS LARA LFEPAFLLILHSLEAFAIGGDEQ+L PEAKRVM++I GK N  AAK ILVDVGLWTSRRQ  +GG                                  E GE  GV+PWSAEAL+AA ALG E+ARR  NYGKR P   VG PAPFGR
Sbjct:   16 LRLLPGTVILQPGDPIEFWHAQGLVLGNYESPVPGRQSLLVRTEAGEPLTIDAGQIVGVWREDEMSGHLPLGRVTAGADGDDGGDXXSSAAXXXXXAAVVAGWAEVREKIRALLQGMPARGLDVGAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPFQFRSPGEAFRPSAVERAAAAQVLAGERSRFKRVVSKRLGPAGVSPDGRGGRRKQRARGAGKGGGAEGEVLV--ADVGDGAVGVRGGGGRGGTVNAQCRDERKQEEEEDLSQPVLISVGGFKAVDQSVAVTREVADFCRVVGEVKRAAAAGVAAGYGDAAA----AEEGGAGSALARARLFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMVDITGKANSTAAKCILVDVGLWTSRRQPEEGGGKPGEEVGEVGR---------------------DEAGEEGGVIPWSAEALEAATALGGERARRRVNYGKRRPLEEVGAPAPFGR 481          
BLAST of mRNA_L-elsbetiae_contig6969.15743.1 vs. uniprot
Match: A0A835Z4W4_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.900e-9
Identity = 130/435 (29.89%), Postives = 170/435 (39.08%), Query Frame = 0
Query:  248 AWAEIREEMRVLLQSTPARGLDLGPFWKAASSRGKGLVATPAHAAEFLFGAGSPEKLGLRKRPPFQF---------------RDPGIAFQPSAVERAAAAQVLSGERSRFKRIVSKRLGGXXXXXXXXXXXXXXXXXXXXXXXXXEGGLPVEGVDAGXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXXEPVL-ISVGGFKAVDHSVAVTREVADFCRVV---------------AGIKRAAAXXXXXXXXXXXXXXXGVEEEGTGSVLAR-----------AGLFEPAFLLILHSLEAFAIGGDEQALNPEAKRVMMEIAGKVNPAAAKSILVDVGLWTSRRQDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEVGEGSGVLPWSAEALQAAAALGKEQARRLANYGK---REPQGNVGMPAPFGR 637
            AW  +++E R LL   P R LDL   WK A  +GKG+V +    A +LFG G+  + G +    FQ                +     + PSA ER AA  VL+ +  RFKR+                                                                             +PV+ +  GGFK VD SV  T +   F  +V               A    AAAXX          XXX                        A L + +   I+HSLE  A+GG    L P+AK  + ++  +   AAA ++LV +G WT R +       XXXXXXXXXXXXXXXXXXXXXXXXXX            +PWSAEAL+AAA +   + RR A Y +     P+  +G P P GR
Sbjct:   11 AWPLLQQEARRLLSRMPPRSLDLHDLWKLARGKGKGVVLSTCDVARWLFGGGA-RRGGKQHAQSFQLTSQQGHASSDFELQQQQQQPVWAPSAAERVAAGLVLAADLQRFKRV----------------------------------------------------------------------PCVLRHSDPVVSVCEGGFKPVDQSVVATNQAMSFATMVKDQFSTAQPPAPASDATSDAAAAXXPAPKVPAPKAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLSDASRRQIVHSLEMLALGGSADGLLPQAKAALRQMGHEPTAAAAHAVLVQMGAWTERARKPSAGTAXXXXXXXXXXXXXXXXXXXXXXXXXX------------VPWSAEALRAAADVAALRRRREAQYARGPLAAPRTPLGAPLPNGR 362          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6969.15743.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKX1_9PHAE9.770e-15959.23RNB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z4W4_9STRA3.900e-929.89RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..54
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..637
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 46..54
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 34..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6969contigL-elsbetiae_contig6969:7261..10424 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6969.15743.1mRNA_L-elsbetiae_contig6969.15743.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6969 7249..10424 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6969.15743.1 ID=prot_L-elsbetiae_contig6969.15743.1|Name=mRNA_L-elsbetiae_contig6969.15743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=637bp
MDPEAPTELRLQHRPQPLASQKASTRLGRPKRTCTAVAALAAIVLANLSA
VSQAFSLSVEIRKSARPGKGGEGPSLRSSAFTVPVTRPRAWRWQHRQHEA
ARSPTPRACLGGGTSTSTSSGSWRLSTRRTASQMSTVMMGSSNASASKEK
QQQQQQQQLQLLPGTVLLQPGDPIEFWHAQGLVLGNYESPVPGRQSLVVR
AETGEQLTIDAGQIVGVWREDEMSGRLPRSISEGSGDGNGGGGGAVAAWA
EIREEMRVLLQSTPARGLDLGPFWKAASSRGKGLVATPAHAAEFLFGAGS
PEKLGLRKRPPFQFRDPGIAFQPSAVERAAAAQVLSGERSRFKRIVSKRL
GGGGGGDGSKADEKRKNRTEGGEQEQEEGGLPVEGVDAGVDGGAEAGARR
PAGDPHEEQQQQQQQQQQRQEQEPVLISVGGFKAVDHSVAVTREVADFCR
VVAGIKRAAAAAAAGVAAGYGGAAAGVEEEGTGSVLARAGLFEPAFLLIL
HSLEAFAIGGDEQALNPEAKRVMMEIAGKVNPAAAKSILVDVGLWTSRRQ
DGGDGGGAPGERAAQAGDNTNDDNVGGDGAEEEEEEQEVGEGSGVLPWSA
EALQAAAALGKEQARRLANYGKREPQGNVGMPAPFGR
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