prot_L-elsbetiae_contig6930.15705.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6930.15705.1
Unique Nameprot_L-elsbetiae_contig6930.15705.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length740
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6930.15705.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 609..738
e-value: 1.9E-26
score: 95.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 113..277
e-value: 1.4E-36
score: 128.4
coord: 350..442
e-value: 4.7E-16
score: 61.0
coord: 443..599
e-value: 6.6E-33
score: 116.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 278..349
e-value: 2.6E-9
score: 38.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 614..637
e-value: 0.0013
score: 16.8
coord: 355..387
e-value: 1.5E-4
score: 19.7
coord: 217..250
e-value: 1.7E-8
score: 32.1
coord: 640..673
e-value: 1.9E-6
score: 25.7
coord: 571..604
e-value: 0.0014
score: 16.6
coord: 469..502
e-value: 1.4E-5
score: 22.9
coord: 287..320
e-value: 0.0013
score: 16.7
coord: 252..284
e-value: 5.4E-4
score: 18.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 271..331
e-value: 7.2E-5
score: 22.8
coord: 625..682
e-value: 2.2E-9
score: 37.3
coord: 375..434
e-value: 9.3E-5
score: 22.4
coord: 562..608
e-value: 0.0036
score: 17.4
coord: 489..544
e-value: 6.0E-5
score: 23.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 179..213
score: 8.539
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 466..500
score: 9.865
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 352..386
score: 9.164
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 707..739
score: 6.621
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 144..178
score: 8.758
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 284..319
score: 7.892
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 672..706
score: 8.605
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 214..248
score: 11.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 249..283
score: 9.854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 501..535
score: 8.857
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 637..671
score: 11.531
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 387..421
score: 9.208
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 568..602
score: 10.348
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 603..636
score: 7.224
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 320..350
score: 6.774
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 123..255
e-value: 4.1E-11
score: 42.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 124..278
coord: 342..546
coord: 271..347
coord: 550..714

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6930contigL-elsbetiae_contig6930:2110..4592 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6930.15705.1mRNA_L-elsbetiae_contig6930.15705.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6930 1804..4619 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6930.15705.1 ID=prot_L-elsbetiae_contig6930.15705.1|Name=mRNA_L-elsbetiae_contig6930.15705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=740bp
MAWGQAALVRAPRRLSRSSAWGALFSTGFFPQVAGRGGAGSQNTLEETPW
PVVANQLRRRRQRQQHQQHHREVDDDGEMASVPPRAIGQRRGAEFSWAMG
PELTGGGSKETLYLRRMKLAHFRNDYQEAARLLSEMEGAGVYIDGRMYHL
TLGVFSSCKRWRDVLDVFDKVKAAGLKPGLDAYNTAIMASANCKDSDRAE
EMLRELPAAGLTPALPTYTALLLAYRHQGRWEDAISLFDEMVAAGITPDE
RAYRTAIDACGIGHQWEKCVRLFREMAAVGISPGVLSYRALVAACKKCGQ
WEFAVAVLKEMHVTEGVGPDLVAYQDAIEACCAALEWEIAFGLLQEMPMS
PGPCSFACCIKACSAVGQFEVAVGLIREMSRAGFRPGVANFNTVLKGCSK
KKQWKIAAGLLREMAQLAVPPLASSYTAAIEACGATGAGVGAGRGGFEQA
VALLREMRGGGGVSPERRTYNAAITCFGSHHEWESAVGVLREMAGDGFAP
DVIAYRYAVDACRKSQQGEKALELLREAEENRLPPDLRTFNHVIASLPFE
RSVQLLLEMREVPGVKPDRRTYNAVLRVCRDCSQWKQAVLILREMAAVGV
PPDVASYTLAAEACERREWSLAVDLLREMQEAGLVPDRHAYVVIVSALGN
GGQREQALEVFREMKSAGLSPNVKCYNAALQALRSGRLGGEAVGLLKAMV
QEGVAPNEGTYGAMKRACEHQDKEWREAETLLKDSRAVG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long