prot_L-elsbetiae_contig6883.15643.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6883.15643.1
Unique Nameprot_L-elsbetiae_contig6883.15643.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length315
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6883.15643.1 vs. uniprot
Match: D7FZM3_ECTSI (HABP4_PAI-RBP1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZM3_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 5.300e-70
Identity = 212/319 (66.46%), Postives = 227/319 (71.16%), Query Frame = 0 
Query:    1 MKKSGGGGRNWGNDAAAGMDNAAAGAENDGEGPAG-NWGANG-VAPNAEGGSKWNAEAAAAEGAEGXXXXXXXGESPKDDTPAPPXXXXXXXEIQLTLDEHQAVLDAKARELADIIGDVSIKTVDESEFQEGAIRNKQEVEEEGYMGGKAGAKARKQKTQ-RTHEVFKDVGFRAPAMNSGGDGXXXXXXXXXDGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKEDGGPPRPRFQGGGGRGG--FRGEGRGGYHGXXXXXXXXXXXXXXYRPEARTGAPLNLKDDEAFPSL 314
            +KKSGGGGRNWGNDAAAGMDNAAA AEN+ EG  G  WGANG  APNAE       +  A +G          GESPK+DTPAP        EIQLTLDEHQA+LDAKA+ELAD+IG+VSIKTVD+SEF +GAIRNKQ+VEEEG+MGGKA  K RK KTQ R  EVF+DVGFRAPAMNSGGDG             R XXXXXXXXXXXXXXXXXX            XXXXXXXXXXXXXXXX        EDGGPPRPRF GGGG  G  FRGEGRG Y GXXXXXXXXX     YR +ART APLNLKDDEAFPSL
Sbjct:  200 IKKSGGGGRNWGNDAAAGMDNAAANAENEAEGDQGAGWGANGSAAPNAEDPMTETGDGQATDG----------GESPKEDTPAPRVPEPEPEEIQLTLDEHQAMLDAKAKELADMIGEVSIKTVDDSEFNDGAIRNKQDVEEEGFMGGKA-TKTRKVKTQQRAKEVFQDVGFRAPAMNSGGDG-------------RGXXXXXXXXXXXXXXXXXXFDRGDRPQRSGYXXXXXXXXXXXXXXXXEGDESTPAEDGGPPRPRFHGGGGGRGXXFRGEGRG-YQGXXXXXXXXX-----YRGDARTSAPLNLKDDEAFPSL 488
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6883.15643.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZM3_ECTSI5.300e-7066.46HABP4_PAI-RBP1 domain-containing protein n=2 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039764RNA binding protein HABP4/SERBP1PANTHERPTHR12299HYALURONIC ACID-BINDING PROTEIN 4coord: 4..210
NoneNo IPR availablePANTHERPTHR12299:SF17AT19571P-RELATEDcoord: 4..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6883contigL-elsbetiae_contig6883:2670..7072 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6883.15643.1mRNA_L-elsbetiae_contig6883.15643.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6883 2102..9471 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6883.15643.1 ID=prot_L-elsbetiae_contig6883.15643.1|Name=mRNA_L-elsbetiae_contig6883.15643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=315bp
MKKSGGGGRNWGNDAAAGMDNAAAGAENDGEGPAGNWGANGVAPNAEGGS
KWNAEAAAAEGAEGEAAAADGGESPKDDTPAPPKPEPEPEEIQLTLDEHQ
AVLDAKARELADIIGDVSIKTVDESEFQEGAIRNKQEVEEEGYMGGKAGA
KARKQKTQRTHEVFKDVGFRAPAMNSGGDGRGRGRGRGRDGGGRGGRGGG
GRGFDRGDRPQRPNYGGEGGEAGEGPRGGNWRGGGGGGRGGEDGGDGNKE
DGGPPRPRFQGGGGRGGFRGEGRGGYHGGGGGGGGGGGGGGGYRPEARTG
APLNLKDDEAFPSL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039764HABP4/SERBP1