prot_L-elsbetiae_contig6861.15618.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6861.15618.1
Unique Nameprot_L-elsbetiae_contig6861.15618.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length99
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6861.15618.1 vs. uniprot
Match: A0A6H5KXM6_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.480e-23
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 0 
Query:    1 MCCSRRLNVVELNPNNED---------DSYGAFAGSDIVLALRGHPGCVQDLCRCPLVHEERGLLLHRKVLLEKIIPELQE 72
            MCCSR L+V E+ P+  +         DSY +FA SDIVLALRGHPGCVQDLCRCP VHEE+GL++HR+ LL + IP+ ++
Sbjct:  623 MCCSRNLSVCEMGPSKPEPFTGTEGKADSYESFAKSDIVLALRGHPGCVQDLCRCPRVHEEKGLIVHREKLLREDIPKARK 703
[Close]
BLAST of mRNA_L-elsbetiae_contig6861.15618.1 vs. uniprot
Match: D8LEZ2_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ2_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.340e-23
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0 
Query:    1 MCCSRRLNVVELNPNNED---------DSYGAFAGSDIVLALRGHPGCVQDLCRCPLVHEERGLLLHRKVLLEKIIPE 69
            MCCSR L+V E+ P+  +         DSY +FA SDIVLALRGHPGCVQDLCRCP VHEE+GL++HR+ LL + IP+
Sbjct:  395 MCCSRNLSVCEMGPSKPEPFTGTEGKADSYESFAKSDIVLALRGHPGCVQDLCRCPRVHEEKGLIVHREKLLREDIPK 472
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6861.15618.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXM6_9PHAE5.480e-2358.02SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEZ2_ECTSI7.340e-2360.26SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6861contigL-elsbetiae_contig6861:5358..6081 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6861.15618.1mRNA_L-elsbetiae_contig6861.15618.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6861 3901..6081 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6861.15618.1 ID=prot_L-elsbetiae_contig6861.15618.1|Name=mRNA_L-elsbetiae_contig6861.15618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MCCSRRLNVVELNPNNEDDSYGAFAGSDIVLALRGHPGCVQDLCRCPLVH
EERGLLLHRKVLLEKIIPELQEQYAPPPSTRSPPARSVTPQQSPLPLLP
back to top