prot_L-elsbetiae_contig683.15588.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig683.15588.1
Unique Nameprot_L-elsbetiae_contig683.15588.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length580
Homology
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BLAST of mRNA_L-elsbetiae_contig683.15588.1 vs. uniprot
Match: A0A6H5JNG5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNG5_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 2.230e-101
Identity = 163/222 (73.42%), Postives = 176/222 (79.28%), Query Frame = 0 
Query:  369 EDEDGGESGTPAHRALGESTCVVRHMHVLQCFLCRQYPRQPKDGRTVVFCAKCPRKACLQCQEKHVSKDRAAWVQGRDTFGLYYEIPECRVCQSGSDDEVPDWVLPPWMEGEEREISEGETRLLLEKFLAWLQDHELAHFFVDEI-----------VKKPMNLTRMRKRLGDGVYDSRRAGQNLFMEDVDWMRHNCILFNGERAAISRSSVLLSRRAHKYYE 579
            E+E GGE GTP  R    STCVVRHMHVLQCFLC QYPRQPKDGR VVFC KCPRKACL+CQE  V+KDR  WV GRDTFG YYEIPEC  CQ GSDDEVP WV PPWMEGE  EISEG+TR LL+KFL WLQ+HELAHFFVDE+           VKKPMN TRMR+RL  G YDSRRAG N FMEDVDW+RHNCI +NGERAAISR +VLL+RRA KYY+
Sbjct:  784 EEEGGGEEGTPTRRVPDYSTCVVRHMHVLQCFLCLQYPRQPKDGRPVVFCQKCPRKACLRCQETKVTKDRTGWVPGRDTFGRYYEIPECNECQKGSDDEVPAWVEPPWMEGEGLEISEGDTRRLLDKFLHWLQNHELAHFFVDEVDPAEYPDYRETVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDVDWVRHNCIKYNGERAAISRCAVLLARRAEKYYD 1005
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BLAST of mRNA_L-elsbetiae_contig683.15588.1 vs. uniprot
Match: D7FI70_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI70_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 1.800e-97
Identity = 152/204 (74.51%), Postives = 161/204 (78.92%), Query Frame = 0 
Query:  355 GKRLRASGGADGGEEDEDGGESGTPAHRALGESTCVVRHMHVLQCFLCRQYPRQPKDGRTVVFCAKCPRKACLQCQEKHVSKDRAAWVQGRDTFGLYYEIPECRVCQSGSDDEVPDWVLPPWMEGEEREISEGETRLLLEKFLAWLQDHELAHFFVDEIVKKPMNLTRMRKRLGDGVYDSRRAGQNLFMEDVDWMRHNCILFNG 558
            GKR R   G + GE DE     GTP  R    STCVVRHMHVLQCFLC QYPRQPKDGR+VVFC KCPRKACL+CQE  +SKDR  WV GRDTFG Y+EIPEC  CQ GSDDEVP WV PPWMEGE REISEG+T  LLEKFL WLQ+HELAHFFVDE VKKPMN TRMR+RL  G YDSRRAG N FMEDVDW+RHNCI FNG
Sbjct:  230 GKRPRVEEGEEEGEGDE-----GTPTRRVPDYSTCVVRHMHVLQCFLCLQYPRQPKDGRSVVFCQKCPRKACLRCQETKLSKDRTGWVPGRDTFGRYFEIPECSECQKGSDDEVPAWVEPPWMEGEGREISEGDTSRLLEKFLHWLQNHELAHFFVDETVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDVDWVRHNCIKFNG 428
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig683.15588.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNG5_9PHAE2.230e-10173.42Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FI70_ECTSI1.800e-9774.51Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..33
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 511..563
e-value: 4.9E-8
score: 32.9
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 512..564
score: 11.312
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 493..579
e-value: 1.8E-11
score: 45.7
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 484..578

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig683contigL-elsbetiae_contig683:11046..20639 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig683.15588.1mRNA_L-elsbetiae_contig683.15588.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig683 11046..26120 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig683.15588.1 ID=prot_L-elsbetiae_contig683.15588.1|Name=mRNA_L-elsbetiae_contig683.15588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=580bp
MVAAAAGSAAQQQQQQEEQEQQEQEQQERWQRQHRRQGQQSGSRRSSPSP
SPPSSSASSRRLSASAASSAAASAAVAASAFSHRSSTRGASPASPPSFSG
GGTGPLEAARGACAGDATTGAAATAGETTNEAAVAVAAASRRERAAAEAA
VSASRMEESAAVATALANEREKTAVASAAATAAVARANGQKETAAAAAAA
AAAAAAAASQREKNAARGAVLASQREKAAAASTAAIATAATAAAAAAIAA
GVARANSEREAAAAAVQPVVSGQGKETRATASAAAAERDCSSSSSSSSPN
TSTGTSGTVVAGGAVSGVGAGGRREGEGRTGAYSREAPMSPGASSSGGPV
GSPGGKRLRASGGADGGEEDEDGGESGTPAHRALGESTCVVRHMHVLQCF
LCRQYPRQPKDGRTVVFCAKCPRKACLQCQEKHVSKDRAAWVQGRDTFGL
YYEIPECRVCQSGSDDEVPDWVLPPWMEGEEREISEGETRLLLEKFLAWL
QDHELAHFFVDEIVKKPMNLTRMRKRLGDGVYDSRRAGQNLFMEDVDWMR
HNCILFNGERAAISRSSVLLSRRAHKYYE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf