prot_L-elsbetiae_contig6824.15584.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6824.15584.1
Unique Nameprot_L-elsbetiae_contig6824.15584.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length72
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6824.15584.1 vs. uniprot
Match: D7G7K7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.730e-22
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0 
Query:    1 MGRYEECRSMVEIVLRMDPDMPAAQTLHKAVQEATARRKSQEVLTVVAGGVMMSGLGIVAALLLN 65
            MGRYEECRSMVEIVLRMDPDMPAAQTLHKAVQEA ARR ++ V  V AGG  ++GLGI+   LL+
Sbjct:   93 MGRYEECRSMVEIVLRMDPDMPAAQTLHKAVQEAVARR-NETVRNVAAGGAAVAGLGILVGALLS 156
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6824.15584.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7K7_ECTSI1.730e-2273.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..71
e-value: 3.7E-9
score: 38.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 1..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..42
NoneNo IPR availableTMHMMTMhelixcoord: 43..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6824contigL-elsbetiae_contig6824:7942..8957 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6824.15584.1mRNA_L-elsbetiae_contig6824.15584.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6824 7180..8962 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6824.15584.1 ID=prot_L-elsbetiae_contig6824.15584.1|Name=mRNA_L-elsbetiae_contig6824.15584.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MGRYEECRSMVEIVLRMDPDMPAAQTLHKAVQEATARRKSQEVLTVVAGG
VMMSGLGIVAALLLNSHRRRN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf