prot_L-elsbetiae_contig6787.15541.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6787.15541.1
Unique Nameprot_L-elsbetiae_contig6787.15541.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length139
Homology
BLAST of mRNA_L-elsbetiae_contig6787.15541.1 vs. uniprot
Match: A0A6H5K0L7_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.770e-22
Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 0
Query:   17 SATGNGYFNVHNTNIVSRSARGNRVELRLDSTP---PFMSCTCGYIPRFRVPCREVIAVGKQLNEVERVMDLVDPAYRIENYRQLYEDPSCLVVLPVLSMIDEDKNLYPPRPVEGQSGRPK 134
            SATGN  F V        S  GNRV L    T      MSCTCG+  RF++PC ++IAVG+ LN+ + VM  +DPAY ++ YR LY D    V LPVL  +  D ++ PPR V  Q+GRPK
Sbjct:  235 SATGNCNFTVRKRG----SQYGNRVRLEFGGTDGGVTLMSCTCGFTTRFKIPCCDIIAVGRVLNKSDEVMASIDPAYHLDTYRALYGDSRFEVQLPVLDELTVDPDILPPRWVPNQAGRPK 351          
BLAST of mRNA_L-elsbetiae_contig6787.15541.1 vs. uniprot
Match: A0A6H5KEB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.710e-20
Identity = 53/121 (43.80%), Postives = 70/121 (57.85%), Query Frame = 0
Query:   17 SATGNGYFNVHNTNIVSRSARGNRVELRL--DSTPPFMSCTCGYIPRFRVPCREVIAVGKQLNEVERVMDLVDPAYRIENYRQLYEDPSCLVVLPVLSMIDEDKNLYPPRPVEGQSGRPKK 135
            SATGNG F V        S  GNRV L    D     M+CTCGY   F++PC +++AVG+ L++ + VM  +DPAY ++ YR LY D    V LPV   +  D ++ PP  V  Q+GRPKK
Sbjct:  147 SATGNGNFTVRKLG----SNYGNRVGLEFGTDGVVTRMTCTCGYTTGFKIPCSDIVAVGRALDKSDEVMSSIDPAYHLDTYRALYADSRFEVQLPVPDELAVDVDILPPPWVPNQAGRPKK 263          
BLAST of mRNA_L-elsbetiae_contig6787.15541.1 vs. uniprot
Match: A0A6H5KJU4_9PHAE (MULE domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.560e-20
Identity = 54/121 (44.63%), Postives = 71/121 (58.68%), Query Frame = 0
Query:   17 SATGNGYFNVHNTNIVSRSARGNRVELRL--DSTPPFMSCTCGYIPRFRVPCREVIAVGKQLNEVERVMDLVDPAYRIENYRQLYEDPSCLVVLPVLSMIDEDKNLYPPRPVEGQSGRPKK 135
            SATGNG F V        S  GNRV L    D     M+CTCGY  RF++PC ++IAVG+ L++ + VM  +DPAY ++ YR LY +    V LPV   +  D ++ PP  V  Q+GRPKK
Sbjct:  225 SATGNGNFTVRKLG----SNYGNRVGLEFGTDGVVTRMTCTCGYTTRFKIPCCDIIAVGRALDKSDEVMSSIDPAYHLDTYRALYAESRFEVHLPVPDELAVDVDILPPVWVPNQAGRPKK 341          
BLAST of mRNA_L-elsbetiae_contig6787.15541.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.570e-11
Identity = 37/100 (37.00%), Postives = 50/100 (50.00%), Query Frame = 0
Query:   39 NRVELRL--DSTPPFMSCTCGYIPRFRVPCREVIAVGKQLNEVERVMDLVDPAYRIENYRQLYEDPSCLVVLPVLSMIDEDKNLYPPRPVEGQSGRPKKG 136
            NRV L    D+      CTC + PRF++PCR VIAV K      R ++L+   Y +  YR    D    ++ PV   +  +    PP  VEG +GRPK G
Sbjct:  483 NRVNLTWGDDADGHHYDCTCDFCPRFKIPCRHVIAVAKSTETANRGLELISKGYSLATYRAAANDSRYRIIPPVWDDLTVNPQHRPPLEVEGAAGRPKSG 582          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6787.15541.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K0L7_9PHAE5.770e-2246.28MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KEB7_9PHAE1.710e-2043.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJU4_9PHAE3.560e-2044.63MULE domain-containing protein n=6 Tax=Ectocarpus ... [more]
A0A6H5L4I0_9PHAE2.570e-1137.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 39..77
score: 8.172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6787contigL-elsbetiae_contig6787:1661..3081 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6787.15541.1mRNA_L-elsbetiae_contig6787.15541.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6787 1659..3081 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6787.15541.1 ID=prot_L-elsbetiae_contig6787.15541.1|Name=mRNA_L-elsbetiae_contig6787.15541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
RGSSRPSAITRRGLVVSATGNGYFNVHNTNIVSRSARGNRVELRLDSTPP
FMSCTCGYIPRFRVPCREVIAVGKQLNEVERVMDLVDPAYRIENYRQLYE
DPSCLVVLPVLSMIDEDKNLYPPRPVEGQSGRPKKGRDA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM