prot_L-elsbetiae_contig6757.15510.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6757.15510.1
Unique Nameprot_L-elsbetiae_contig6757.15510.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length49
Homology
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BLAST of mRNA_L-elsbetiae_contig6757.15510.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.350e-18
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0 
Query:    9 QDVRSCCLCKSTGDGDGTGRLLPLDDGHWIHTHCGLWSSEV 49
            QDVR+CCLCK+TGDGD TGRLLPLDDG WIHT CGLWS EV
Sbjct: 2367 QDVRACCLCKATGDGDKTGRLLPLDDGQWIHTLCGLWSREV 2407
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6757.15510.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHU3_ECTSI2.350e-1885.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 8..49
e-value: 5.1E-5
score: 25.3
IPR034732Extended PHD (ePHD) domainPROSITEPS51805EPHDcoord: 11..49
score: 12.715

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6757contigL-elsbetiae_contig6757:9723..9869 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6757.15510.1mRNA_L-elsbetiae_contig6757.15510.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6757 9723..9869 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6757.15510.1 ID=prot_L-elsbetiae_contig6757.15510.1|Name=mRNA_L-elsbetiae_contig6757.15510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=49bp
MSSISLAVQDVRSCCLCKSTGDGDGTGRLLPLDDGHWIHTHCGLWSSEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR034732EPHD