prot_L-elsbetiae_contig6747.15492.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6747.15492.1
Unique Nameprot_L-elsbetiae_contig6747.15492.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length403
Homology
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BLAST of mRNA_L-elsbetiae_contig6747.15492.1 vs. uniprot
Match: A0A6H5KKU8_9PHAE (TFIIS N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU8_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 2.200e-85
Identity = 211/423 (49.88%), Postives = 236/423 (55.79%), Query Frame = 0 
Query:    1 MVKEKGASPLRRLPSRSGRASFEGDPTDGGAPNGDVAPSPGATGESEKTQEXXXXXXXXXXXXXASGADARAGPPASKKPATVAVTPRGRGRPRKKPLEQP----VKGDTAATAAAAASPRTDGSSPAXXXXXXXXXXRAVDGWETAARP--------------------------AVAARKEKETGEGGNESDEWSDHDEVHDLPDEIKAQFGQVVWAKFGGSPPWPALVWDPRFLGKNKGSRDLARATYAALGKSHLVRFYDN-RNSFACLPYKSIKPFDVAELPTHLKGCSTPKKKEDYKEDVQRGVEASRLSRSERLAEIYEVGRWTGKKK----PRKXXXXXXXXQEKGERQGKSKPSQSASKAAAEPPKKRGRGRPRKIPLPAQPPVKELDEDPPSPVSSAGAEYELPVPEPSEDRE 388
            M KEKGA+P RRLP RSGRASFEGD          VA        +    +XXXXXXXXXXXXX                             RKKPLE P     K +      AA   R   SS            R V GWE+   P                          A AA   +  G  GNESDEWSDHDEVH LP E+KAQFGQVVWAK G +PPWPALVWDPRFLG +K +R +AR  YAA+GKSHLV+FY   +NSFAC+PYK IKPFD  ELPTHLK C+  KKK+  KEDVQ  VEAS L++SERLAEI+ VGRWTG KK    P+K                    S++ + A+AEPPKKRGRGRPRK PLP    VKELD DPPSPVSS G EYELPVPE  E  E
Sbjct:    1 MAKEKGAAPSRRLPGRSGRASFEGD---------QVAAEGAGVRSAPSNDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKPLEPPPPLSAKEEQVDPEVAAIVARASPSS----------SPRTVGGWESGPVPGRHSVAMPKTDEGNKAGTAAAVKDNNAAAATAAEGDGADGNESDEWSDHDEVHYLPREVKAQFGQVVWAKMG-NPPWPALVWDPRFLGNDKVARGVARMAYAAVGKSHLVKFYTAAKNSFACVPYKRIKPFDATELPTHLKACNGAKKKDTLKEDVQTAVEASLLTKSERLAEIHMVGRWTGNKKNSSTPKKANNTAT--------------SRTPTAASAEPPKKRGRGRPRKTPLP----VKELDADPPSPVSSGGVEYELPVPEAEEGAE 385
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BLAST of mRNA_L-elsbetiae_contig6747.15492.1 vs. uniprot
Match: A0A836CFN4_9STRA (PWWP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFN4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.370e-9
Identity = 35/89 (39.33%), Postives = 48/89 (53.93%), Query Frame = 0 
Query:  157 GEGGNESDEWSDHDEVHDLPDEIKAQFGQVVWAKFGGSPPWPALVWDPRFLGKNKGSRDLARATYAALGKSHLVRFYDNRNSFACLPYK 245
            G+ G+  +  S  DEV  +P E K +FG +VWAK G  PPWPAL+WDPR+     GSR  A   Y +L K     ++   N +  +  K
Sbjct:   15 GDDGDVDNGESSEDEVSLMPQEYKDKFGDLVWAKMGRYPPWPALIWDPRYA--PAGSRKQA---YLSLRKKFFTVWFYGNNQYGFISPK 98
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BLAST of mRNA_L-elsbetiae_contig6747.15492.1 vs. uniprot
Match: K3WLH8_GLOUD (PWWP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLH8_GLOUD)

HSP 1 Score: 63.2 bits (152), Expect = 4.840e-7
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 0 
Query:  172 VHDLPDEIKAQFGQVVWAKFGGSPPWPALVWDPRFLGKNKGSRDLARATYAALGKSHLVRFYDNRNSFACLPYKSIKPFD 251
            V  L  E+KA+FGQ+VWAK  G P WPAL+ DPR+L                L   +LV FY+ +N FA   +K+++P+D
Sbjct:  284 VEALDPEVKAKFGQIVWAKMTGYPYWPALITDPRYLPPK-----FQVTAMKDLETKYLVYFYNAKN-FAATLFKNVEPWD 357
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6747.15492.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KKU8_9PHAE2.200e-8549.88TFIIS N-terminal domain-containing protein n=2 Tax... [more]
A0A836CFN4_9STRA1.370e-939.33PWWP domain-containing protein n=1 Tax=Tribonema m... [more]
K3WLH8_GLOUD4.840e-741.25PWWP domain-containing protein n=1 Tax=Globisporan... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 87..97
score: 65.91
coord: 339..349
score: 62.88
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 87..99
e-value: 2.3
score: 13.2
coord: 341..353
e-value: 2.2
score: 13.3
IPR000313PWWP domainSMARTSM00293PWWP_4coord: 181..251
e-value: 0.0017
score: 27.2
IPR000313PWWP domainPFAMPF00855PWWPcoord: 182..276
e-value: 9.4E-15
score: 54.8
IPR000313PWWP domainPROSITEPS50812PWWPcoord: 183..253
score: 9.164
NoneNo IPR availableGENE3D2.30.30.140coord: 172..291
e-value: 4.0E-15
score: 57.7
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 175..293

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6747contigL-elsbetiae_contig6747:798..4466 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6747.15492.1mRNA_L-elsbetiae_contig6747.15492.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6747 798..4490 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6747.15492.1 ID=prot_L-elsbetiae_contig6747.15492.1|Name=mRNA_L-elsbetiae_contig6747.15492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=403bp
MVKEKGASPLRRLPSRSGRASFEGDPTDGGAPNGDVAPSPGATGESEKTQ
EQQQPSSSGEDNNNASGADARAGPPASKKPATVAVTPRGRGRPRKKPLEQ
PVKGDTAATAAAAASPRTDGSSPATSPRSDGSSPRAVDGWETAARPAVAA
RKEKETGEGGNESDEWSDHDEVHDLPDEIKAQFGQVVWAKFGGSPPWPAL
VWDPRFLGKNKGSRDLARATYAALGKSHLVRFYDNRNSFACLPYKSIKPF
DVAELPTHLKGCSTPKKKEDYKEDVQRGVEASRLSRSERLAEIYEVGRWT
GKKKPRKPKKAPKTPQEKGERQGKSKPSQSASKAAAEPPKKRGRGRPRKI
PLPAQPPVKELDEDPPSPVSSAGAEYELPVPEPSEDREGRAGGEEDGGGE
EEG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
IPR000313PWWP_dom