prot_L-elsbetiae_contig664.15368.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig664.15368.1
Unique Nameprot_L-elsbetiae_contig664.15368.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length124
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig664.15368.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.930e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0 
Query:   25 GAIFLDERSSFAAGGVNFTDNSAEVYGGVIHAQNGSIITTQGGTINIFHGNSAR 78
            GA++L+  SS  AGG NFT NSA++YGG +HAQ+ S +TTQ GT N FHGN+AR
Sbjct:   15 GAVYLEGGSSLNAGGANFTGNSADIYGGAVHAQDASTVTTQDGTTNTFHGNAAR 68
[Close]
BLAST of mRNA_L-elsbetiae_contig664.15368.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.890e-12
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 0 
Query:   25 GAIFLDERSSFAAGGVNFTDNSAEVYGGVIHAQNGSIITTQGGTINIFHGNSAR 78
            GA++L+  S+  AGG NFT NSA++YGG +HAQ+ S +TTQ GT N FHGN+AR
Sbjct:   66 GAVYLEGGSTLNAGGANFTGNSADIYGGAVHAQDASTVTTQDGTTNTFHGNAAR 119
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig664.15368.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L324_9PHAE1.930e-1261.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI4.890e-1259.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 40..57
e-value: 0.15
score: 12.6
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 39..61
e-value: 7.2E-5
score: 20.5
coord: 72..89
e-value: 0.0013
score: 16.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig664contigL-elsbetiae_contig664:2964..13726 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig664.15368.1mRNA_L-elsbetiae_contig664.15368.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig664 2964..13726 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig664.15368.1 ID=prot_L-elsbetiae_contig664.15368.1|Name=mRNA_L-elsbetiae_contig664.15368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
AASGGSSVTFVDCDVFGNRASSNGGAIFLDERSSFAAGGVNFTDNSAEVY
GGVIHAQNGSIITTQGGTINIFHGNSARLGGAIHAQDDSDITFGGGGEVT
LSRNFAQFQGGAVHLLRSCLFKTN
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat