prot_L-elsbetiae_contig6547.15245.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig6547.15245.1
Unique Name	prot_L-elsbetiae_contig6547.15245.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	247

Homology

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BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Match: A0A6H5KKC3_9PHAE (LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKC3_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 1.130e-119
Identity = 173/193 (89.64%), Postives = 182/193 (94.30%), Query Frame = 0

Query:   54 GKKSKAPAKKAAPASRAVSTNAVDGLVGFDIETGGPFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESPAGGDLGFDPLGLKPSGDEAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLEKVDALAGFS 246
            G+KSK PA KA PA R VSTNAVDGLVG DIETGGPFDPLGFG+NCPP+QMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKS SAWGAMQQVYEQRPFAFLQIILAIFAVEVYGN++QEE+ AGGDLGFDPLGLKPS  EAWERVQLRELKNGRLAMFAILGMIVQE+ITGVGVLEKVD+LAG +
Sbjct:   42 GRKSK-PAPKAPPA-RPVSTNAVDGLVGADIETGGPFDPLGFGKNCPPQQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNKRQEENEAGGDLGFDPLGLKPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLAGLA 232

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BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Match: A0A0G4GYX1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GYX1_VITBC)

HSP 1 Score: 182 bits (462), Expect = 5.300e-54
Identity = 96/176 (54.55%), Postives = 120/176 (68.18%), Query Frame = 0

Query:   68 SRAVSTNAVDGLVGFDIETGGPFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEE-SPAGGDLGFDPLGLKPSGDEAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLEKVDAL 242
            S  + TNA  GL+G D+E    FDPLGF  N   E ++WYRAAELKHGRVCMLAA GQ+ Q F H  DPSG+FD ++S++GA  +V  +RP+A +QI+LAIFAVEV G + Q +   A GDL FDP  ++    E WE  QLRELKNGRLAM  I  M+VQE I+G GV+ +   L
Sbjct:   43 SMKLGTNA-QGLIGSDLEWP-EFDPLGFTNNISDETLEWYRAAELKHGRVCMLAALGQLVQSFWHLPDPSGVFDSTDSSFGAFNKVVSERPWAAIQILLAIFAVEVLGAKTQAKPGQAPGDLDFDPFKVRSDDPEIWEATQLRELKNGRLAMIGITAMLVQEAISGKGVIAQWQGL 216

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BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA)

HSP 1 Score: 182 bits (461), Expect = 7.730e-54
Identity = 95/166 (57.23%), Postives = 115/166 (69.28%), Query Frame = 0

Query:   77 DGLVGFDIETGGPFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEE-SPAGGDLGFDPLGLKPSGDEAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLEKVDA 241
            +GLVG D+E    +DPLGF  N  P+ + WYRAAELKHGRV MLAA G+I Q + H  DP  +F +S   W A+QQVY +RP A  QI+LAIFA E  G  +Q +   A GDL +DPL LKPS  E WE+VQLRELKNGRLAM AI G  VQEN+TG G +E++ A
Sbjct:   45 EGLVGSDLELA-TWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSYYHLPDP--VFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQIYA 207

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BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ)

HSP 1 Score: 172 bits (437), Expect = 3.020e-50
Identity = 92/165 (55.76%), Postives = 113/165 (68.48%), Query Frame = 0

Query:   74 NAVDGLVGFDIETGGPFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEE-SPAGGDLGFDPLGLKPSGDEAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLE 237
            ++ +GL+G D+E    FDPLGF  N  P  ++WYRAAELKHGRV MLAA GQ+ Q F H  DP  +F +S   W A+ +V  +RP A +QI LAIFA E  G   Q +   A GDLG+DPL L+ S +E +ER QLRELKNGRLAM AI  MIVQEN+TG GV+E
Sbjct:   40 SSAEGLIGSDLELP-EFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSFYHLPDP--VFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAIGQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAITAMIVQENLTGYGVIE 201

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BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Match: W7TCK1_9STRA (Chloroplast light harvesting protein isoform 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCK1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 6.220e-50
Identity = 98/182 (53.85%), Postives = 117/182 (64.29%), Query Frame = 0

Query:   66 PASRAVSTNAV--------DGLVGFDIETGGPFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEE-SPAGGDLGFDPLGLKPSGDEAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLEK 238
            P++R+ S  AV         GL G DIE    FDPLGF  N  PE + WYRAAELKHGRV MLAA GQI QHF    D SG+F   +    A+ +V  +RP A +QI LAIFAVE  G   Q +   A GDLG+DPL LK    E + +VQ RELKNGRLAM AI GM+VQEN+TG+GV+E+
Sbjct:   23 PSARSFSRTAVTMKLGSSAQGLAGSDIEFP-EFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGVIEQ 203

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BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Match: A0A0G4GRR2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GRR2_9ALVE)

HSP 1 Score: 163 bits (413), Expect = 9.450e-47
Identity = 93/170 (54.71%), Postives = 112/170 (65.88%), Query Frame = 0

Query:   74 NAVDGLVGFDIETGGPFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEE-SPAGGDLGFDPLGLKPSGDEAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLEKVDAL 242
            NAV G+ G D E    FDP+GF +N P E ++WYRAAELKHGRVCMLAA G I    TH   P   F+   S  GA+ ++ E+RP+A LQI+LAIFAVE  G + Q E    GGDLGFDPLGLKPS  E  E  QLRE+KNGRLAM AILG   QE +T   +++  D +
Sbjct:   45 NAV-GMPGTDFELP-DFDPIGFTQNAPLETLEWYRAAELKHGRVCMLAALGNIVAGITHL--PDTCFEGKGSL-GAVYKIMEERPWAGLQIVLAIFAVEALGQKIQSEPGREGGDLGFDPLGLKPSDPELLEATQLREIKNGRLAMIAILGQWAQEYVTNRPIIDFDDVV 209

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BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Match: A0A835Z156_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z156_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.730e-42
Identity = 84/181 (46.41%), Postives = 112/181 (61.88%), Query Frame = 0

Query:   61 AKKAAPASRAVSTNAVDGLVGFDIETGGPFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESPAGGDLGFDPLGLKPSGDEAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLEKVDA 241
            A+ A  AS +    + DGLVG  +ETGG +DP         E + WYRAAELKHGRVCMLAA G + Q +  W  P  +F  + +   A+ Q+Y +RP A  QI+LAI A+EV G+  Q+ + A GDL +DPLGL P   E    +QL+ELKNGRLAM A  G  +QE +TG G +E++ +
Sbjct:   27 AQVARVASSSAMQMSADGLVGASVETGGVWDPANLASKASEEDLAWYRAAELKHGRVCMLAAVGCLVQGY--WQLPDPVFSNTKAV-DAVAQIYTERPGAIYQILLAIAAIEVLGSSIQKYT-APGDLKWDPLGLAPEDPEELATLQLKELKNGRLAMVATAGFFLQEALTGQGAVEQITS 203

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BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Match: A0A7S4UG07_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UG07_9DINO)

HSP 1 Score: 149 bits (376), Expect = 5.530e-42
Identity = 82/133 (61.65%), Postives = 94/133 (70.68%), Query Frame = 0

Query:  106 WYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEE-SPAGGDLGFDPLGLKPSGDEAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLE 237
            WYRAAELKHGRV MLAA GQI Q F    DP  +F +  + W AM +VYE+RP A +QI+LA FA E  G   Q     A GDLGFDPL LK +  E +ERVQLRELKNGRLAM+AI  MIVQEN+TG GV+E
Sbjct:    1 WYRAAELKHGRVAMLAALGQIFQSFYTLPDP--VFAEKANPWQAMIKVYEERPLAMVQILLAAFACEAAGAFIQARPGQAPGDLGFDPLNLKSNDPEIFERVQLRELKNGRLAMWAIAAMIVQENLTGYGVIE 131

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BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Match: A0A0G4F0S3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0S3_VITBC)

HSP 1 Score: 149 bits (377), Expect = 3.420e-41
Identity = 78/170 (45.88%), Postives = 113/170 (66.47%), Query Frame = 0

Query:   70 AVSTNAVDGLVGFDIETGGPFDPLGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNRKQEESPAGGDLGFDPLGLKPSGDEAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLEKV 239
            A+  +   GLVG DI+    FDPLG  +    E ++WYRAAELKHGRV MLAA G + Q+   +  P   F ++N    A+ +++ +RP A +QI+ AI A+EV GN+ Q ++  GGDL +DPLG+KP+  E + ++QLRELKNGRLAM ++LGM  QE +T  G ++++
Sbjct:   48 ALDPSFAGGLVGNDIDAPN-FDPLGLSKTADDETLKWYRAAELKHGRVAMLAALGFLVQNI--YQLPDSPFQEANPI-NAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQTEDGGDLKWDPLGIKPNDPEEFRKMQLRELKNGRLAMISVLGMTAQEALTDQGPIDQI 213

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BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Match: A0A0G4ESK4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ESK4_VITBC)

HSP 1 Score: 143 bits (361), Expect = 1.060e-38
Identity = 88/180 (48.89%), Postives = 113/180 (62.78%), Query Frame = 0

Query:   68 SRAVSTNAVDGLVGFDIETGGPFDP--LGFGRNCPPEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAMQQVYEQRPFAFLQIILAIFAVEVYG-NRKQEESPAGGDLGFDPLGLKP-----SGDEAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLEKV 239
            SR  +     GLVG DIE    FDP  L  G +  PE + WYRAAELKHGR+CMLAA G  TQ      DPSG+F ++     A+ +V  +RP A +Q++LAI A+EV   NR    +P  GDLGFDPL L+      S  EA+E++QLRELKNGRLAM A  GM++Q+ +TG   LE++
Sbjct:   40 SRLQAEGPPGGLVGSDIEAPN-FDPWKLAAG-DLEPETLSWYRAAELKHGRICMLAALGLTTQEVVQLPDPSGVFSETKGI-PALVKVANERPGAIIQLLLAIGAIEVAALNRADSAAP--GDLGFDPLNLQQKLGLASNPEAFEKMQLRELKNGRLAMVATAGMLIQQFLTGQATLEQL 214

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig6547.15245.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KKC3_9PHAE	1.130e-119	89.64	LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
A0A0G4GYX1_VITBC	5.300e-54	54.55	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
A0A835YT25_9STRA	7.730e-54	57.23	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
FCP_CHAMQ	3.020e-50	55.76	Fucoxanthin-chlorophyll a-c binding protein, chlor...	[more]
W7TCK1_9STRA	6.220e-50	53.85	Chloroplast light harvesting protein isoform 4 n=2...	[more]
A0A0G4GRR2_9ALVE	9.450e-47	54.71	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]
A0A835Z156_9STRA	3.730e-42	46.41	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A7S4UG07_9DINO	5.530e-42	61.65	Hypothetical protein n=1 Tax=Alexandrium monilatum...	[more]
A0A0G4F0S3_VITBC	3.420e-41	45.88	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
A0A0G4ESK4_VITBC	1.060e-38	48.89	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 78..243 e-value: 1.7E-37 score: 131.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 87..228 e-value: 8.6E-35 score: 120.6
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 62..232
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 88..238
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 62..232

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig6547	contig	L-elsbetiae_contig6547:5559..9396 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig6547.15245.1	mRNA_L-elsbetiae_contig6547.15245.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig6547 5441..10740 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig6547.15245.1 ID=prot_L-elsbetiae_contig6547.15245.1|Name=mRNA_L-elsbetiae_contig6547.15245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=247bp
MFLSLARSGQPSHGDLQAGAGTHRTWGAVRSVVLLRFRVATQPKIVNMAF
GLGGKKSKAPAKKAAPASRAVSTNAVDGLVGFDIETGGPFDPLGFGRNCP
PEQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSNSAWGAM
QQVYEQRPFAFLQIILAIFAVEVYGNRKQEESPAGGDLGFDPLGLKPSGD
EAWERVQLRELKNGRLAMFAILGMIVQENITGVGVLEKVDALAGFS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln