prot_L-elsbetiae_contig6474.15153.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig6474.15153.1
Unique Name	prot_L-elsbetiae_contig6474.15153.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	195

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig6474.15153.1 vs. uniprot
Match: D7G0W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W8_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 1.270e-100
Identity = 151/194 (77.84%), Postives = 165/194 (85.05%), Query Frame = 0

Query:    1 DKGEPLVSPARNFSPITVGKRLLKPSPPRVKRVVRRPAAYEESILSRYLSQSLPAKLSAXXXXXXXXXXXALFFGEGDGPKLVKRDAPLVPGDRLKGGQYISFCTSILATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTAAKGGATGSSSYELVYSGERVVLNKDGKVKWSAAVRSLPKNMQPWPLSK 194
            DKGEPL+SPAR FSPIT GKRLLKPS PR  ++  RP   EES+LSRY SQSLPAKLSA           ALFFGEGDGPKLVKRDAPL PGDRLKGGQYISFCTSI+ATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGT AKGG    + YELVY+G+RVVLNKDGKVKWS++V+SLPKNM+PWPL++
Sbjct:   42 DKGEPLISPAR-FSPITAGKRLLKPSSPR--KITMRPVVKEESMLSRYFSQSLPAKLSAVLSVVAIAVAAALFFGEGDGPKLVKRDAPLFPGDRLKGGQYISFCTSIIATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTGAKGGGGKEAFYELVYTGDRVVLNKDGKVKWSSSVKSLPKNMRPWPLAQ 232

[Close]

BLAST of mRNA_L-elsbetiae_contig6474.15153.1 vs. uniprot
Match: A0A836CBU0_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.090e-16
Identity = 57/172 (33.14%), Postives = 89/172 (51.74%), Query Frame = 0

Query:   41 EESILSRYLSQSLPAKLSAXXXXXXXXXXXALFF---GEGDGPKLVKRDAPLVPGDRLKGGQYISFCTSILA--TGCKPKYFELGRDGSLGVYGGKSPYAQKA--KLWTAGTAAKGG-----ATGSSSYELV-----YSGERVVLNKDGKVKWSAAVRSLPKNMQP-WPLSK 194
            E ++ ++Y  + L   L             AL++   G    P+L++RDAPLV GD LK G+Y++ CT I A  T C P YFEL  +G LG++ GK P       KLW +G+AAK       A  ++   L+     Y+  ++ + +  +V W+AA   LP+ ++  WPL +
Sbjct:   13 ERTLWAQYQGERLAVVLGNIVGVLLLLVAVALYYVPPGPAGAPRLIRRDAPLVDGDVLKAGEYMTTCTGITAMVTNCTPMYFELSPNGELGLFRGKGPLDDPPAQKLWASGSAAKPSKKKRFAKSTAEQPLLLPRALYAAGQLTVKRGDEVVWAAAAERLPEALRGGWPLKQ 184

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig6474.15153.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig6474.15153.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G0W8_ECTSI	1.270e-100	77.84	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CBU0_9STRA	1.090e-16	33.14	Plastocyanin-like domain-containing protein n=1 Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..56
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 57..75
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 76..194
None	No IPR available	TMHMM	TMhelix		coord: 53..75

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig6474	contig	L-elsbetiae_contig6474:3729..9616 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig6474.15153.1	mRNA_L-elsbetiae_contig6474.15153.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig6474 3729..9616 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig6474.15153.1 ID=prot_L-elsbetiae_contig6474.15153.1|Name=mRNA_L-elsbetiae_contig6474.15153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
DKGEPLVSPARNFSPITVGKRLLKPSPPRVKRVVRRPAAYEESILSRYLS
QSLPAKLSAVLSVVAIAVALALFFGEGDGPKLVKRDAPLVPGDRLKGGQY
ISFCTSILATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTAAKGG
ATGSSSYELVYSGERVVLNKDGKVKWSAAVRSLPKNMQPWPLSK*