prot_L-elsbetiae_contig6445.15118.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig6445.15118.1
Unique Name	prot_L-elsbetiae_contig6445.15118.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	307

Homology

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BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: D7FKU4_ECTSI (Chlorophyll binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU4_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 1.180e-124
Identity = 180/211 (85.31%), Postives = 195/211 (92.42%), Query Frame = 0

Query:   13 MKCIAMLLAACA-GAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFETPFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGE 222
            MKC   +LAACA GA AFVAPSAFNGAA+ TRA++SSAMKM+FENELGAQ PLGFWDPLYWLE+ADQERFDRLRYVEIKHGRICMLAILGH+TQENVRLPG LNFETPFAD+PNGL AISKMG FGVAQIV FIGFLELFVMKQKEGSFPGDMSRINPFEKQWESF EETKL+KRAIELNNGRAAQMGIF +V+HEI+  +PYIIN I+G+
Sbjct:    1 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGD 211

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BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: Q9FEP5_SACLA (Light harvesting protein lhcf3 (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q9FEP5_SACLA)

HSP 1 Score: 336 bits (861), Expect = 6.870e-114
Identity = 159/196 (81.12%), Postives = 183/196 (93.37%), Query Frame = 0

Query:   34 AFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNF--ETPFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGE-KWLA 226
            AFNGA++ TRA+TSSAMKM+FENELG QAPLG+WDPLYWLENADQERFDRLRYVEIKHGRICMLAILGH+ QENVRLPG+L+F  +  FAD+PNGLGA+SKMG  GVAQIV+FIGFLE+FVMKQKEGSFPGDMSR+NPFEKQW+SF EETKL+KRAIELNNGRAAQMGIFG++VHE+++NQPY+IN++LGE  W A
Sbjct:    1 AFNGASMATRAKTSSAMKMSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQENVRLPGMLSFSNDQSFADMPNGLGALSKMGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLGELSWAA 196

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BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 1.140e-88
Identity = 140/215 (65.12%), Postives = 169/215 (78.60%), Query Frame = 0

Query:   13 MKCIAMLLAACAGAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 224
            MK   M LA  A A AFVAPSAFNGAA+ T A++SSAMKM+FE+E+GAQ PLGFWDPL  L +ADQERF+RLRYVE+KHGRI MLAI GHLTQ+NVRLPG+L+      FAD+PNG+ A+SK+   G+AQI  F+GFLEL VMK  EGSFPGD +   NPF   W++ SEET+  KRAIELNNGRAAQMGI  ++VHE ++N+PYIIND+LG  +
Sbjct:    1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASY 215

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BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 266 bits (679), Expect = 4.830e-86
Identity = 138/206 (66.99%), Postives = 162/206 (78.64%), Query Frame = 0

Query:   22 ACAGAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGD-MSRINPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 224
            ACA A     PSAFNGAAL+T A++SSAMKM+FE+E+GAQAPLGFWDPL  L +ADQERF+RLRYVE+KHGRI MLAI GHLTQ+N RLPG+L+      FAD+PNG+ A+SK+   G+AQI  FIGFLEL VMK  EGSFPGD +   NPF   W+S S ET+  KRAIELNNGRAAQMGI GM+VHE +SNQPYI ND+LG  +
Sbjct:    3 ACAAAPGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASY 208

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BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 266 bits (679), Expect = 5.910e-86
Identity = 135/211 (63.98%), Postives = 165/211 (78.20%), Query Frame = 0

Query:   17 AMLLAACAGAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 224
            A++  ACA A  F  PSAFNGAALTT A+  SAMKM+FE+E+GAQAPLGFWDPL  L +ADQERF+RLRYVE+KHGRI MLAI GHLTQ+N RLPG+L+      FAD+PNG+ A+SK+   G+AQI  FIGFLEL VMK  EGSFPGD +   NPF   W++ SEET+  KRAIELNNGRAAQMGI  ++VHE ++N+PY+IND++G  +
Sbjct:    4 AVMAVACAAAPGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASY 214

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BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: D7FIR0_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR0_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.400e-85
Identity = 138/207 (66.67%), Postives = 166/207 (80.19%), Query Frame = 0

Query:   20 LAACAG-AQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWL-ENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLL--NFETPFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGE 222
            +AACA  A AFVAPSAF GA+LT     SS+MKM+FE E+GAQAP+G+WDPL  L ++  QERFDRLRYVEIKHGRI MLAILGH+T +N R PG+L  + +  FAD PNGL AISK+  +G+ QI +FIGFLE  VM QKEGSFPGDMS INPFEK+WES++EE +  KRAIELNNGRAAQMGI G++VHE ++N PY+IN+ILG 
Sbjct:   11 VAACAATASAFVAPSAFKGASLTAAKPASSSMKMSFETEIGAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQNFRFPGMLAPSADLSFADCPNGLAAISKIPLYGLIQIFLFIGFLETKVMLQKEGSFPGDMSLINPFEKEWESWTEEEQATKRAIELNNGRAAQMGILGLMVHEQINNTPYVINEILGS 217

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BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 4.140e-82
Identity = 127/195 (65.13%), Postives = 158/195 (81.03%), Query Frame = 0

Query:   33 SAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLN--FETPFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 224
            SAFNGAA+ T A++SSAMKM+FE+E+GAQ PLGFWDPL  L +ADQERF+RLRYVE+KHGRI MLAI GHLTQ+NVRLPG+L+   +  FAD+PNG+ A+SK+   G+AQI  F+GFLEL VMK  EGSFPGD +   NPF   W++ SEET+  KRAIELNNGRAAQMGI  ++VHE ++N+PY+IND+LG  +
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGY 218

[Close]

BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 253 bits (647), Expect = 4.030e-81
Identity = 130/209 (62.20%), Postives = 162/209 (77.51%), Query Frame = 0

Query:   19 LLAACAGAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 224
            ++A  + A     PSAFNGAALTT A++SSAMKM+FE+E+GAQAPLGFWDPL  LE+ADQ+ F+RLRYVE+K GRI MLAI GHLTQ+N RLPG+L+      FAD+PNG+ A+SK+   G+AQI  FIGFLEL VMK  EGSFPGD +   NPF   W++ S ET+  KRAIELNNGRAAQMGI  ++VHE ++N+PY+IND+LG  +
Sbjct:    5 IMAVASAAPGLRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASY 213

[Close]

BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 251 bits (640), Expect = 4.050e-80
Identity = 128/206 (62.14%), Postives = 157/206 (76.21%), Query Frame = 0

Query:   22 ACAGAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 224
            ACA A        FNGAAL T A++SSAMKM+FE+E+GAQ P+GFWDPL  + +ADQERFDRLRYVEIKHGRI MLA++GH+TQ+N RLPG+L+F+    FAD PNG+ A SK+   G  QI++ IG  ELFV+KQ EGSFPGD +   N F+  W++ SEET+  KRAIELNNGRAAQMGI  M+VHE +SNQPYIIND+ G  +
Sbjct:    4 ACAAAPGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAY 209

[Close]

BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 6.530e-79
Identity = 127/194 (65.46%), Postives = 156/194 (80.41%), Query Frame = 0

Query:   34 AFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 224
            AFNGAA+ T A++SSAMKM+FE+E+GAQ PLGFWDPL  LE+ADQERF+RLRYVE+KHGRI MLAI GHLTQ+N RLPG+L+      FAD+PNG+ A+SK+   G+AQI  FIGFLEL VMK  EGSFPGD +   NPF   W++ SEET+  KRAIELNNGRAAQMGI  ++VHE ++N+PY+IND+LG  +
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGY 374

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FKU4_ECTSI	1.180e-124	85.31	Chlorophyll binding protein n=2 Tax=Ectocarpus Tax...	[more]
Q9FEP5_SACLA	6.870e-114	81.12	Light harvesting protein lhcf3 (Fragment) n=1 Tax=...	[more]
A0A6H5KCX6_9PHAE	1.140e-88	65.12	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
FCPF_MACPY	4.830e-86	66.99	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
FCPB_MACPY	5.910e-86	63.98	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
D7FIR0_ECTSI	1.400e-85	66.67	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A6H5JHT6_9PHAE	4.140e-82	65.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPC_MACPY	4.030e-81	62.20	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
FCPE_MACPY	4.050e-80	62.14	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]
D8LNK6_ECTSI	6.530e-79	65.46	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 55..207 e-value: 8.8E-32 score: 110.9
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 52..222 e-value: 1.9E-22 score: 81.9
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 18..209
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 18..209
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 45..132
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 15..26
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 27..44
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..44
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 133..152
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 153..306
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..28 score: 0.789
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 45..217
None	No IPR available	TMHMM	TMhelix		coord: 15..37
None	No IPR available	TMHMM	TMhelix		coord: 134..153

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig6445	contig	L-elsbetiae_contig6445:3545..6730 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig6445.15118.1	mRNA_L-elsbetiae_contig6445.15118.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig6445 3545..6730 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig6445.15118.1 ID=prot_L-elsbetiae_contig6445.15118.1|Name=mRNA_L-elsbetiae_contig6445.15118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
LSPQAFLTFTLNMKCIAMLLAACAGAQAFVAPSAFNGAALTTRARTSSAM
KMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAIL
GHLTQENVRLPGLLNFETPFADVPNGLGAISKMGGFGVAQIVVFIGFLEL
FVMKQKEGSFPGDMSRINPFEKQWESFSEETKLQKRAIELNNGRAAQMGI
FGMVVHEIMSNQPYIINDILGEKWLACLPRFYIHHAAVLNPLATTKSRWF
EVYGSCCVCVVALTAKFCAQNCRLCSKYLKWSKSSSYSPTPETHVFHFSG
TSYTWP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln