prot_L-elsbetiae_contig638.15047.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig638.15047.1
Unique Name	prot_L-elsbetiae_contig638.15047.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	226

Homology

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BLAST of mRNA_L-elsbetiae_contig638.15047.1 vs. uniprot
Match: D8LBJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ2_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 8.210e-34
Identity = 86/144 (59.72%), Postives = 100/144 (69.44%), Query Frame = 0

Query:   16 LVLAVDGGAPLPARP-PLGSGGFIVNESST---SSSSSNVSGSGIPKSPAAAKPSKPSFVSVGIRSGCARERAATAATLRNKGVAGASAASRLRGGSTWIPHPPVKFSRADLEHSQAKTISSA-DPVSLHRPTE---SSSCNSK 151
            L+ +VDG APL ARP P+   GFIVNE  +   S  SS+ SGS +    AAA P +PSFVSVGIRSGCARE+AAT ATLRNK  AG SAASRLRGGSTWIP+PPV    +D      KT +SA +PVS H PT    SSSC+S+
Sbjct:   12 LLASVDGSAPLLARPAPVQRAGFIVNEGGSKIVSGDSSSSSGSNVVTEEAAATPERPSFVSVGIRSGCAREKAATTATLRNKDRAGTSAASRLRGGSTWIPNPPVMVRESDTT---PKTHNSAAEPVSSHPPTGASGSSSCHSR 152

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig638.15047.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig638.15047.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LBJ2_ECTSI	8.210e-34	59.72	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..15
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..225
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.938
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig638	contig	L-elsbetiae_contig638:24749..30641 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig638.15047.1	mRNA_L-elsbetiae_contig638.15047.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig638 24200..30819 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig638.15047.1 ID=prot_L-elsbetiae_contig638.15047.1|Name=mRNA_L-elsbetiae_contig638.15047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=226bp
MSFRLCVVVLGVLVALVLAVDGGAPLPARPPLGSGGFIVNESSTSSSSSN
VSGSGIPKSPAAAKPSKPSFVSVGIRSGCARERAATAATLRNKGVAGASA
ASRLRGGSTWIPHPPVKFSRADLEHSQAKTISSADPVSLHRPTESSSCNS
KGGGGGGNGDPNHNAAEFAVSKQRVVEEEEESADPLAFEDEEEEGVGGAI
GGGGGGGRVGTPSIPRALKKFAWVP*