prot_L-elsbetiae_contig6377.15039.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig6377.15039.1
Unique Name	prot_L-elsbetiae_contig6377.15039.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	149

Homology

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BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: D7G7L5_ECTSI (RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L5_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 3.850e-45
Identity = 82/109 (75.23%), Postives = 92/109 (84.40%), Query Frame = 0

Query:   41 KKRTDWACSKCTTLNFARRDQCFGCGAAAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETAAKSGGGG 149
            +KR DW CSKC+TLNFARRD+CFGCGAA G G + +++PTNVLRVS LRR TT EQVV ALK FAPVKDAHLAVHP T  SLRAC+VEFQSVEHAQHTL+TA+  G GG
Sbjct:   73 RKRADWECSKCSTLNFARRDRCFGCGAAMGKG-YRTTIPTNVLRVSGLRRSTTSEQVVLALKPFAPVKDAHLAVHPTTNASLRACHVEFQSVEHAQHTLDTASVEGDGG 180

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BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A7S2FQV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQV4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.170e-7
Identity = 38/118 (32.20%), Postives = 54/118 (45.76%), Query Frame = 0

Query:   43 RTDWACSKCTTLNFARRDQCFGCGA----------------AAGGGGF--GSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETA 142
            R+DW C  C   NFARR QCF CGA                  GGGG    S++P+ +L    +   ++   +    +A+A VK+  + +H           +EF SVE+A H L TA
Sbjct:    1 RSDWICIACKGQNFARRTQCFKCGAEKTADCELVGPNGFLGGPGGGGEEPASAVPSPILVAKHISPRSSDLSIADGCRAYAQVKEVRV-MHSYA-------LIEFYSVEYATHVLNTA 110

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BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A2R6XQU6_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XQU6_MARPO)

HSP 1 Score: 57.0 bits (136), Expect = 1.340e-6
Identity = 35/116 (30.17%), Postives = 48/116 (41.38%), Query Frame = 0

Query:   44 TDWACSKCTTLNFARRDQCFGCGAA-----------------AGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETA 142
            TDW C+ C  +NFARR  CF C                    +GG     + PT+VL V  L      E + +    +AP+KD  L     T  S    ++ + SVE A   LE +
Sbjct:  372 TDWMCTVCACVNFARRTLCFQCNEGRAEDAPAADLPASTAPVSGGRRASEAGPTHVLVVRGLDENVNEESLHYEFSKYAPIKDLRLVRDKFTHVSRGFAFIHYNSVEEATKALEAS 487

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BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A1U7ZUJ9_NELNU (SUPPRESSOR OF ABI3-5 isoform X1 n=4 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZUJ9_NELNU)

HSP 1 Score: 56.6 bits (135), Expect = 1.810e-6
Identity = 40/115 (34.78%), Postives = 48/115 (41.74%), Query Frame = 0

Query:   44 TDWACSKCTTLNFARRDQCFGCGAA----AGGGGFGSSMP------------TNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETA 142
            +DW C+ C  +NFARR  CF C  A    A     GSS P            T+VL V  L      E + +     AP+KD  L     T  S    +V F SVE A   LE A
Sbjct:  405 SDWMCTMCGCVNFARRTSCFQCNEARADDAPAADVGSSNPATLGKKGPEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEAA 519

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BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: SUA_ARATH (SUPPRESSOR OF ABI3-5 n=10 Tax=Arabidopsis TaxID=3701 RepID=SUA_ARATH)

HSP 1 Score: 56.2 bits (134), Expect = 2.450e-6
Identity = 37/117 (31.62%), Postives = 48/117 (41.03%), Query Frame = 0

Query:   44 TDWACSKCTTLNFARRDQCFGCGA---------------AAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETAAKS 145
            TDW C+ C  +NFARR  CF C                 +A G     + PT+VL V  L      E + +     AP+KD  L     T  S    +V F SVE A   LE   ++
Sbjct:  380 TDWICTICGCINFARRTSCFQCNEPKTKDSPSADVGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRT 496

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BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: R0FNE0_9BRAS (Uncharacterized protein n=9 Tax=Camelineae TaxID=980083 RepID=R0FNE0_9BRAS)

HSP 1 Score: 55.8 bits (133), Expect = 3.210e-6
Identity = 37/112 (33.04%), Postives = 46/112 (41.07%), Query Frame = 0

Query:   44 TDWACSKCTTLNFARRDQCFGCGA---------------AAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLE 140
            TDW C+ C  +NFARR  CF C                 +A G     + PT+VL V  L      E + +     AP+KD  L     T  S    +V F SVE A   LE
Sbjct:  101 TDWMCTICGCINFARRTSCFQCNEPKTKDSPAADVGLANSASGKRISETGPTHVLVVRGLDEDADEEMIRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFCSVEDATKALE 212

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BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A1D1YN58_9ARAE (RNA-binding protein 5 n=4 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YN58_9ARAE)

HSP 1 Score: 55.1 bits (131), Expect = 6.180e-6
Identity = 36/112 (32.14%), Postives = 46/112 (41.07%), Query Frame = 0

Query:   44 TDWACSKCTTLNFARRDQCFGCGAAAGG---------------GGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLE 140
            +DW C+ C  +NFARR  CF C  A                  G  G + PT+VL V  L      E + +     AP+KD  L     T  S    +V F S+E A   LE
Sbjct:  386 SDWMCTICGCINFARRTSCFQCNEARTDDAPPADVSTSNPTPVGKKGEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSIEEATKALE 497

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BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A5B7AKD4_DAVIN (Putative RNA-binding protein 5-B isoform X1 (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7AKD4_DAVIN)

HSP 1 Score: 54.3 bits (129), Expect = 6.570e-6
Identity = 36/112 (32.14%), Postives = 46/112 (41.07%), Query Frame = 0

Query:   44 TDWACSKCTTLNFARRDQCFGCGAAAGG---------------GGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLE 140
            +DW C+ C  +NFARR  CF C                     G  G + PT+VL V  L      E + +     AP+KD  L     T  S    +V F SVE A  +LE
Sbjct:   54 SDWMCTICGCVNFARRTSCFQCNEGRADDAPPADMTSSNPTPLGKKGEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKSLE 165

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BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: UPI001CC45291 (SUPPRESSOR OF ABI3-5 isoform X3 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC45291)

HSP 1 Score: 54.3 bits (129), Expect = 1.140e-5
Identity = 38/114 (33.33%), Postives = 48/114 (42.11%), Query Frame = 0

Query:   44 TDWACSKCTTLNFARRDQCFGCG-----------------AAAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLE 140
            +DW C+ C  +NFARR  CF C                  A+ G  GF +  PT+VL V  L      E + +     AP+KD  L     T  S    +V F SVE A   LE
Sbjct:  394 SDWMCTICGCVNFARRTSCFQCNEPRTEDAPAADIALSNPASLGRKGFEAG-PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALE 506

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BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A3Q7HRI7_SOLLC (Uncharacterized protein n=40 Tax=Solanaceae TaxID=4070 RepID=A0A3Q7HRI7_SOLLC)

HSP 1 Score: 54.3 bits (129), Expect = 1.140e-5
Identity = 36/112 (32.14%), Postives = 47/112 (41.96%), Query Frame = 0

Query:   44 TDWACSKCTTLNFARRDQCFGCGA---------------AAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLE 140
            +DW C+ C  +NFARR  CF C                 ++  G  G + PT+VL V  L      E + +     AP+KD  L     T  S    +V F SVE A   LE
Sbjct:  353 SDWMCTICGCVNFARRTSCFQCNEPRTDDAPPADMASSNSSSLGRRGEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEEASKALE 464

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7L5_ECTSI	3.850e-45	75.23	RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ecto...	[more]
A0A7S2FQV4_9STRA	7.170e-7	32.20	Hypothetical protein (Fragment) n=1 Tax=Florenciel...	[more]
A0A2R6XQU6_MARPO	1.340e-6	30.17	Uncharacterized protein n=2 Tax=Marchantia polymor...	[more]
A0A1U7ZUJ9_NELNU	1.810e-6	34.78	SUPPRESSOR OF ABI3-5 isoform X1 n=4 Tax=Nelumbo nu...	[more]
SUA_ARATH	2.450e-6	31.62	SUPPRESSOR OF ABI3-5 n=10 Tax=Arabidopsis TaxID=37...	[more]
R0FNE0_9BRAS	3.210e-6	33.04	Uncharacterized protein n=9 Tax=Camelineae TaxID=9...	[more]
A0A1D1YN58_9ARAE	6.180e-6	32.14	RNA-binding protein 5 n=4 Tax=Anthurium amnicola T...	[more]
A0A5B7AKD4_DAVIN	6.570e-6	32.14	Putative RNA-binding protein 5-B isoform X1 (Fragm...	[more]
UPI001CC45291	1.140e-5	33.33	SUPPRESSOR OF ABI3-5 isoform X3 n=1 Tax=Manihot es...	[more]
A0A3Q7HRI7_SOLLC	1.140e-5	32.14	Uncharacterized protein n=40 Tax=Solanaceae TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 44..68 e-value: 9.8E-7 score: 38.4
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 45..69 e-value: 2.2E-6 score: 26.9
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 46..65
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 42..71 score: 9.123
None	No IPR available	GENE3D	4.10.1060.10		coord: 38..72 e-value: 6.7E-9 score: 36.8
None	No IPR available	PANTHER	PTHR13948	RNA-BINDING PROTEIN	coord: 36..143
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 21..149
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..15
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 76..148 e-value: 1.3E-7 score: 33.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..141 e-value: 1.1E-5 score: 25.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 21..140
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 38..68

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig6377	contig	L-elsbetiae_contig6377:1105..4040 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig6377.15039.1	mRNA_L-elsbetiae_contig6377.15039.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig6377 1105..4040 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig6377.15039.1 ID=prot_L-elsbetiae_contig6377.15039.1|Name=mRNA_L-elsbetiae_contig6377.15039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
GSGRGSFAAAAAAAAGSSSSRGPRSSRGPREPSPPPPGRQKKRTDWACSK
CTTLNFARRDQCFGCGAAAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHA
LKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETAAKSGGGG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001876	Znf_RanBP2
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR035979	RBD_domain_sf
IPR036443	Znf_RanBP2_sf