prot_L-elsbetiae_contig6375.15036.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6375.15036.1
Unique Nameprot_L-elsbetiae_contig6375.15036.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length106
Homology
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BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Match: D7FJZ6_ECTSI (RNA_pol_L_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ6_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 4.620e-69
Identity = 99/104 (95.19%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:    1 MAVNEHRPTIADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALDLLKEGLRDLRDLCNVLEERVEQEIP 104
            MAVNEHRPT+AD+KFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPAL+LLKEGLRDLRDLCN+LEERVE+EIP
Sbjct:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVEREIP 104
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BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Match: A0A835YNA2_9STRA (RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA2_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.260e-46
Identity = 70/101 (69.31%), Postives = 88/101 (87.13%), Query Frame = 0 
Query:    1 MAVNEHRPTIADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTT-GRPALDLLKEGLRDLRDLCNVLEERVE 100
            M+VNEHRP  AD+KF++ EG++ +SATF+FGDEDHTLGNALRHVLMQ  E DFCGYSVPHPSEPKMNLRLQT  G PA+D+LK GL+DL  +C++L+E+++
Sbjct:    1 MSVNEHRPKPADLKFEILEGATTTSATFVFGDEDHTLGNALRHVLMQMPETDFCGYSVPHPSEPKMNLRLQTRDGVPAIDVLKRGLQDLVTICDILDEKLD 101
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BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Match: A0A7S4DHT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHT9_HETAK)

HSP 1 Score: 139 bits (351), Expect = 1.240e-40
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = 0 
Query:    1 MAVNEHRPTIADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALDLLKEGLRDLRDLCNVL 95
            MAVNEHR   A+ +F V EGS+  SATF+FG+EDHTLGNALRHVLMQ KE DFCGYSVPHP+EPKMN+RLQT G  AL +L+ GL DL  +C++L
Sbjct:   28 MAVNEHRTMPAEERFAVLEGSTSHSATFVFGNEDHTLGNALRHVLMQRKETDFCGYSVPHPTEPKMNVRLQTHGEDALTVLRAGLADLSGICDLL 122
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BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Match: A0A7R9U1D2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 5.450e-39
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 0 
Query:    1 MAVNEHRPTIADVKFQVKEGSS---LSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGR--PALDLLKEGLRDLRDLCNVLEE 97
            MAVNE R   ADV F+V E +    + + TF+FGDE HTLGNALRHVLM+ KE  FCGYS+PHPSEPKMN+RLQTT +  PA+DLLK GL+DL D+C+V++E
Sbjct:    1 MAVNEQRLATADVAFEVLEAADETDVGNRTFVFGDEGHTLGNALRHVLMRRKETHFCGYSIPHPSEPKMNMRLQTTDKEMPAIDLLKTGLQDLADVCDVVDE 102
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BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Match: A0A4D9D350_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D350_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.520e-37
Identity = 60/104 (57.69%), Postives = 81/104 (77.88%), Query Frame = 0 
Query:    1 MAVNEHRPTIADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTG-RPALDLLKEGLRDLRDLCNVLEERVEQEI 103
            M+VNEHRP  A+ KF+  E +   S TF+FGDEDHTLGN+LRHVLM  KE  FCGYSVPHPSEPKMN+RLQT+  +PAL +LK+GL ++ ++C++ +  +++ I
Sbjct:    1 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAI 104
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BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Match: W7TJI2_9STRA (Dna-directed rna polymerases i and iii subunit rpac2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI2_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.320e-36
Identity = 60/104 (57.69%), Postives = 81/104 (77.88%), Query Frame = 0 
Query:    1 MAVNEHRPTIADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTG-RPALDLLKEGLRDLRDLCNVLEERVEQEI 103
            M+VNEHRP  A+ KF+  E +   S TF+FGDEDHTLGN+LRHVLM  KE  FCGYSVPHPSEPKMN+RLQT+  +PAL +LK+GL ++ ++C++ +  +++ I
Sbjct:   37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAI 140
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BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Match: A0A7S2UY40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY40_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.740e-36
Identity = 58/104 (55.77%), Postives = 79/104 (75.96%), Query Frame = 0 
Query:    1 MAVNEHRPTIADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTT-GRPALDLLKEGLRDLRDLCNVLEERVEQEI 103
            MAVNEH+   AD++FQ  +GS++ S TF FGDEDHTLGNALRHVLMQ  + + CGYSVPHP+EP M++RLQT  G  A ++LK+GL DL  +C+ L ++ ++ +
Sbjct:    1 MAVNEHKTLPADIRFQKLQGSTIDSCTFSFGDEDHTLGNALRHVLMQQAKTELCGYSVPHPTEPYMHVRLQTIQGSDATEVLKDGLNDLAKICDTLTDKFDKAL 104
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BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Match: A0A7S1TTH9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTH9_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.000e-36
Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 0 
Query:    1 MAVNEHRPTIADVKFQV---KEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRP--ALDLLKEGLRDLRDLCNVLEERVEQEI 103
            M+VNEHR    +V FQ+    +     + TFIFG+EDHTLGNALRHVLMQ +E  FCGYS+PHPSEPKMNLRLQT  +   A+DLLK GL+DL ++C+V++E  +  +
Sbjct:    1 MSVNEHRTPQEEVDFQILNSPDDKDPGNRTFIFGNEDHTLGNALRHVLMQRRETQFCGYSIPHPSEPKMNLRLQTVNKDTDAVDLLKTGLKDLSEICDVVDETFDDAL 108
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BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Match: A0A7S0XDL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.290e-32
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 0 
Query:    1 MAVNEHRPTIADVK--FQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGR-PALDLLKEGLRDLRDLCNVLEERVEQEI 103
            M+VN+HR  +A     F++K G++  SATFIFG+EDHTLGN+LR+VL Q  EVDF GYSVPHP EPK+N+RLQT     A+++LK+GL+DL +  N+L++   Q I
Sbjct:    1 MSVNDHRIPLASNTELFEIKPGNNNKSATFIFGNEDHTLGNSLRYVLSQRNEVDFVGYSVPHPYEPKLNIRLQTKENYTAVNVLKDGLKDLEETANILDDVFIQSI 106
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BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Match: A0A7S2WKX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKX3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.040e-29
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 0 
Query:    1 MAVNEHRPTIADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTT-GRPALDLLKEGLRDLRDLCNVLE 96
            MAVNE     A+ + QVK G S   ATFI GD+DHTLGNALRHVLMQ +  +FCGYS+PHPSEP ++LRLQT  G  A + LK GL++L   C+ +E
Sbjct:    1 MAVNEVTAKTAEHRLQVKLGESEDCATFILGDQDHTLGNALRHVLMQTRGTEFCGYSIPHPSEPYVHLRLQTQDGTSAAEKLKAGLKELSVSCDHIE 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6375.15036.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJZ6_ECTSI4.620e-6995.19RNA_pol_L_2 domain-containing protein n=2 Tax=Ecto... [more]
A0A835YNA2_9STRA2.260e-4669.31RNA polymerase Rpb3/Rpb11 dimerization domain-cont... [more]
A0A7S4DHT9_HETAK1.240e-4068.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9U1D2_9STRA5.450e-3963.73Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9D350_9STRA4.520e-3757.69RNA_pol_L_2 domain-containing protein n=1 Tax=Nann... [more]
W7TJI2_9STRA1.320e-3657.69Dna-directed rna polymerases i and iii subunit rpa... [more]
A0A7S2UY40_9STRA2.740e-3655.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TTH9_9STRA3.000e-3656.48Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0XDL5_9STRA5.290e-3254.72Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2WKX3_9STRA1.040e-2957.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 16..101
NoneNo IPR availablePANTHERPTHR13946:SF28DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2coord: 16..101
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 10..104
e-value: 1.6E-33
score: 116.2
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 21..103
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 26..98
e-value: 2.8E-31
score: 107.1
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 30..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6375contigL-elsbetiae_contig6375:579..5414 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6375.15036.1mRNA_L-elsbetiae_contig6375.15036.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6375 220..5414 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6375.15036.1 ID=prot_L-elsbetiae_contig6375.15036.1|Name=mRNA_L-elsbetiae_contig6375.15036.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MAVNEHRPTIADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKE
VDFCGYSVPHPSEPKMNLRLQTTGRPALDLLKEGLRDLRDLCNVLEERVE
QEIPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR009025RBP11-like_dimer
IPR008193RNA_pol_Rpb11_13-16kDa_CS