prot_L-elsbetiae_contig635.15006.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig635.15006.1
Unique Nameprot_L-elsbetiae_contig635.15006.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length143
Homology
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BLAST of mRNA_L-elsbetiae_contig635.15006.1 vs. uniprot
Match: A0A6H5L4W1_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W1_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.180e-49
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 0 
Query:   38 NPWRTLTPPDFVIGYARGVGRVRCSTCLSKITQGELQLGAFYMHGQRSVTLLRWHHQRCIDAPDCLTNPFDLCGTEDLAAEDLEAVCKWLGYGIEEAVKDRTWTA 142
            NPW+ L P DFVIGYARG+GRVRCS+C  KI+ G+LQLGAFYMH  R  TLLRWHHQ C+DAP+CLT+P DLCG EDL+ ED++ VC+WL +G    VKDRTWTA
Sbjct:   65 NPWKELAPEDFVIGYARGLGRVRCSSCGCKISAGQLQLGAFYMHEDR-FTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGPVKDRTWTA 168
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig635.15006.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4W1_9PHAE1.180e-4968.57PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001510Zinc finger, PARP-typeSMARTSM01336zf_PARP_3coord: 51..128
e-value: 0.0018
score: 18.8
IPR001510Zinc finger, PARP-typePFAMPF00645zf-PARPcoord: 57..124
e-value: 2.1E-5
score: 25.3
IPR001510Zinc finger, PARP-typePROSITEPS50064PARP_ZN_FINGER_2coord: 48..127
score: 9.899
IPR036957Zinc finger, PARP-type superfamilyGENE3D3.30.1740.10coord: 42..141
e-value: 1.9E-8
score: 36.3
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 45..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig635contigL-elsbetiae_contig635:9744..12383 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig635.15006.1mRNA_L-elsbetiae_contig635.15006.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig635 9662..12624 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig635.15006.1 ID=prot_L-elsbetiae_contig635.15006.1|Name=mRNA_L-elsbetiae_contig635.15006.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MMSTTAAPPTLMHRSSRSLDEVAATCLAKQASVNPCSNPWRTLTPPDFVI
GYARGVGRVRCSTCLSKITQGELQLGAFYMHGQRSVTLLRWHHQRCIDAP
DCLTNPFDLCGTEDLAAEDLEAVCKWLGYGIEEAVKDRTWTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001510Znf_PARP
IPR036957Znf_PARP_sf