prot_L-elsbetiae_contig6342.14999.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6342.14999.1
Unique Nameprot_L-elsbetiae_contig6342.14999.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length177
Homology
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A6H5L3V5_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 3.050e-70
Identity = 120/153 (78.43%), Postives = 133/153 (86.93%), Query Frame = 0
Query:   27 GSMMA--MMRKPVRSQAASDAVGAARRAGHGLCMSHRDLAASRQCPDIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEGAVDAEGVPRREEEP 177
            GSMMA  M R P+R QA +D V A R    GL M+ R+LAASRQC DIPTETLSL +DFVVINKPADVRMDG+FDV V+KLIR+WCPTLE+K+LKWVHQLDFATSGVLCVALHREAAARGCEAFRERRA+K+YLAVV+GAVD E VPRREEEP
Sbjct:   29 GSMMASLMRRSPIRCQALADTVMAQR----GLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEP 177          
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A7S3H910_9STRA (Hypothetical protein (Fragment) n=3 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H910_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.680e-23
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 0
Query:   66 SRQCPDIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEGAVDAEGVPRREEEP 177
            S+  P      L L  ++ V++KP  VRM G F +T+EKL+ HW P ++   LKW+HQLDFATSGVLCV L+R AAA    AF  R  +K YLAV++G V+ +  P  E +P
Sbjct:   38 SQVFPPACESILYLDTNYCVVDKPHKVRMTGDFSITMEKLLLHWIPGIQIGSLKWIHQLDFATSGVLCVGLNRAAAAVASAAFEARTVKKQYLAVLQGHVNLDDWPILEAKP 149          
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A482SV00_9ARCH (PseudoU_synth_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV00_9ARCH)

HSP 1 Score: 100 bits (250), Expect = 2.460e-22
Identity = 57/112 (50.89%), Postives = 69/112 (61.61%), Query Frame = 0
Query:   71 DIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLI-----RHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEGAVDAEGVPRREEEP 177
            D+    L+ ++ F VI+KPADVRMDG+FDVTVEKL+     +        KD KWVHQLDFATSG LCVAL RE AA     F  R   K YL+V+ G +D +    RE EP
Sbjct:   24 DVQLNILAENKHFYVIDKPADVRMDGNFDVTVEKLLLLHIKKPDGSATTPKDFKWVHQLDFATSGALCVALTREGAAAASSCFEHREVEKHYLSVLSGTLDLDKYCYREYEP 135          
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: W2Q6J3_PHYPN (PseudoU_synth_2 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN)

HSP 1 Score: 99.4 bits (246), Expect = 4.140e-21
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 0
Query:   77 LSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEG--------AVDAEGVP 171
            LS  E FVV+NK  D RMDG+FDVT+EK +    P +E+   +W+HQLDFATSGVL V  ++EA A GC  FRE++ +K YLAVV+G        +VD  GVP
Sbjct:   98 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPQVEK--FRWIHQLDFATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQGHLPFNPADSVDTAGVP 198          
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: G4ZW01_PHYSP (Pseudouridine synthase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZW01_PHYSP)

HSP 1 Score: 97.1 bits (240), Expect = 1.710e-20
Identity = 55/118 (46.61%), Postives = 68/118 (57.63%), Query Frame = 0
Query:   62 DLAASRQCPDIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEG--------AVDAEGVP 171
            D    R    +    LS  E FVV+NK  D RMDG FDVT+EK +    P + +   +W+HQLDFATSGVL V   +EA A GC  FRE++ +K YLAVV G        +VD  GVP
Sbjct:   83 DRGGPRTLDQLQLRVLSKDEHFVVLNKGPDERMDGEFDVTLEKALARDFPDVPK--FRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVRGHLPFNPADSVDRSGVP 198          
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A329SUS2_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SUS2_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.280e-20
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 0
Query:   77 LSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEG--------AVDAEGVP 171
            LS  E FVV+ K  D RMDG+FDVT+EK +    P +++   +W+HQLDFATSGVL V  ++EA A GC  FRE++ +K YLAVV G        +VD++GVP
Sbjct:   47 LSRDEHFVVLYKGPDERMDGAFDVTLEKALARDFPQVDK--FRWIHQLDFATSGVLAVGANKEATATGCRLFREKQVQKEYLAVVRGHLPFNPAESVDSDGVP 147          
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A0P1AWK8_PLAHL (Rna pseudouridylate synthase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK8_PLAHL)

HSP 1 Score: 95.1 bits (235), Expect = 8.660e-20
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 0
Query:   71 DIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEG 163
            D+    LS +++FVV+NK  D R+DG+FDVT+EK +    P +++   +W+HQLDFATSGVL V +++EA A GC  FRE++ +K YLAV+ G
Sbjct:   36 DLQLHILSKNKNFVVLNKGPDERLDGAFDVTLEKALTRDFPHVDK--FRWIHQLDFATSGVLVVGVNKEATATGCRLFREKQVQKEYLAVIRG 126          
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A225VLR7_9STRA (Pseudouridine synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLR7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.570e-19
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:   62 DLAASRQCPDIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVV 161
            D    +    +    LS  E FVV+NK  D RMDG+FDVT+EK +    P +E+   +W+HQLDFATSGVL V   +EA A GC  FRE++ +K YLAVV
Sbjct:   95 DRGGPKMLEQLKLRVLSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPEIEK--FRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVV 192          
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A7S1TJJ5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TJJ5_9RHOD)

HSP 1 Score: 87.4 bits (215), Expect = 3.980e-19
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 0
Query:   62 DLAASRQCPDIPT--ETLSLSEDFVVINKPADVRMDGSFDVTVEKL----IRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAV 160
            +    R+ P++P     L  SE ++V++KPADVRMDG F VTVEKL    ++      E    K +HQLD+ATSGVL + L REAA   C+ F  RR +KTYLA+
Sbjct:   11 NTVVGRRPPEVPPTLRVLFASERYLVVDKPADVRMDGDFPVTVEKLAEKELQARMGVQEVPRTKMIHQLDYATSGVLLLGLTREAARHACQLFEARRVKKTYLAI 115          
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A7S3EEX3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEX3_9RHOD)

HSP 1 Score: 90.9 bits (224), Expect = 6.370e-19
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 0
Query:   81 EDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKW--------VHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEGAV 165
            E +VV+NKPADVRMDG FDVTVEKL+R     L +KD  W        VHQLD+ATSGVL +AL R +AA  C+ F  R  +K YLA+V G +
Sbjct:   40 EGYVVVNKPADVRMDGEFDVTVEKLVR---AHLTKKDATWEKEGKIRFVHQLDYATSGVLLLALTRRSAAFTCKQFERRTVQKKYLALVYGTI 129          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3V5_9PHAE3.050e-7078.43PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S3H910_9STRA2.680e-2347.32Hypothetical protein (Fragment) n=3 Tax=Spumella e... [more]
A0A482SV00_9ARCH2.460e-2250.89PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
W2Q6J3_PHYPN4.140e-2152.43PseudoU_synth_2 domain-containing protein n=16 Tax... [more]
G4ZW01_PHYSP1.710e-2046.61Pseudouridine synthase n=1 Tax=Phytophthora sojae ... [more]
A0A329SUS2_9STRA4.280e-2050.49PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A0P1AWK8_PLAHL8.660e-2049.46Rna pseudouridylate synthase-like protein n=1 Tax=... [more]
A0A225VLR7_9STRA1.570e-1949.00Pseudouridine synthase n=1 Tax=Phytophthora megaka... [more]
A0A7S1TJJ5_9RHOD3.980e-1946.67Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S3EEX3_9RHOD6.370e-1954.84Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 82..169
e-value: 4.2E-17
score: 62.7
NoneNo IPR availableGENE3D3.30.2350.10coord: 76..175
e-value: 1.0E-19
score: 72.9
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 75..167
NoneNo IPR availablePANTHERPTHR21600:SF41RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 1coord: 75..167
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 72..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6342contigL-elsbetiae_contig6342:345..2108 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6342.14999.1mRNA_L-elsbetiae_contig6342.14999.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6342 345..2253 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6342.14999.1 ID=prot_L-elsbetiae_contig6342.14999.1|Name=mRNA_L-elsbetiae_contig6342.14999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MLAGGWVHQHVLGSSSSTASFISPTVGSMMAMMRKPVRSQAASDAVGAAR
RAGHGLCMSHRDLAASRQCPDIPTETLSLSEDFVVINKPADVRMDGSFDV
TVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRE
RRARKTYLAVVEGAVDAEGVPRREEEP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR020103PsdUridine_synth_cat_dom_sf