prot_L-elsbetiae_contig6336.14987.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6336.14987.1
Unique Nameprot_L-elsbetiae_contig6336.14987.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length246
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6336.14987.1 vs. uniprot
Match: D8LHE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE9_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 1.810e-70
Identity = 132/228 (57.89%), Postives = 160/228 (70.18%), Query Frame = 0 
Query:    1 MNVVVQVFGAAGLVETMVELAYVISSRQYFNPFEEVFFLTTVVFESGAELLFLSVGYCWLRRHSNLRTSVKTLSKDPVHHIAAVATDSADDISWELSALSHASIVLSLVPLLAWLTFFPVWGSSFS-GVNDQDLREALSICSLVGVGAFVVSSARAVVSSLGVDRQSAMDVVVAIGMVLYAMQKCFVVYVLLSNLERLCPNVLGKALIAFLCLEVVSVAIGVVALISV 227
            M V VQVFGAAGLVET+VE+AYV+++ + F  FEE +FL +V FE   ELLFL  G C L R+SN RT+ + L+KDPVHH+AAVATDS D +SWE +ALS AS V+SL+PLLAW TF PVWG  F+    D+ LR ALS  SL GV A + S  RA  SS G  RQ AMD +V +G+V YA QK F V VL S  ERLC  VLGKAL+  L +E++SVA  VV + SV
Sbjct:    1 MEVAVQVFGAAGLVETVVEVAYVVTTLRRFTTFEEWYFLASVSFEVAGELLFLFAGICLLSRNSNRRTTARALTKDPVHHVAAVATDS-DYMSWEFAALSLASTVVSLLPLLAWATFLPVWGEPFAEDGGDEGLRVALSAFSLTGVVAMLASGERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCTGVLGKALVVLLTVEILSVAFAVVVIFSV 227
[Close]
BLAST of mRNA_L-elsbetiae_contig6336.14987.1 vs. uniprot
Match: A0A6H5JPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP1_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.080e-34
Identity = 78/137 (56.93%), Postives = 94/137 (68.61%), Query Frame = 0 
Query:   92 ISWELSALSHASIVLSLVPLLAWLTFFPVWGSSFSGVN-DQDLREALSICSLVGVGAFVVSSARAVVSSLGVDRQSAMDVVVAIGMVLYAMQKCFVVYVLLSNLERLCPNVLGKALIAFLCLEVVSVAIGVVALISV 227
            +SWE +ALS AS V+SLVPLLAW TF PVWG  F+  + D+DLR ALS  SL GV A + S+ RA  SS G  RQ AMD +V +G+V YA QK F V VL S  ERLC  VLGKAL+  L +E++SVA  VV + SV
Sbjct:    1 MSWEFAALSLASTVVSLVPLLAWATFLPVWGEPFAEDDGDEDLRVALSAFSLTGVVAMLASAERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCSGVLGKALVVLLTVEILSVAFAVVVIFSV 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6336.14987.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHE9_ECTSI1.810e-7057.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPP1_9PHAE2.080e-3456.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..124
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 125..135
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 206..229
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 230..245
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 158..168
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 169..191
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..103
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 192..205
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 136..157
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..20
NoneNo IPR availableTMHMMTMhelixcoord: 206..228
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 99..121
NoneNo IPR availableTMHMMTMhelixcoord: 36..58
NoneNo IPR availableTMHMMTMhelixcoord: 136..158
NoneNo IPR availableTMHMMTMhelixcoord: 170..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6336contigL-elsbetiae_contig6336:3005..4403 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6336.14987.1mRNA_L-elsbetiae_contig6336.14987.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6336 3005..4731 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6336.14987.1 ID=prot_L-elsbetiae_contig6336.14987.1|Name=mRNA_L-elsbetiae_contig6336.14987.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=246bp
MNVVVQVFGAAGLVETMVELAYVISSRQYFNPFEEVFFLTTVVFESGAEL
LFLSVGYCWLRRHSNLRTSVKTLSKDPVHHIAAVATDSADDISWELSALS
HASIVLSLVPLLAWLTFFPVWGSSFSGVNDQDLREALSICSLVGVGAFVV
SSARAVVSSLGVDRQSAMDVVVAIGMVLYAMQKCFVVYVLLSNLERLCPN
VLGKALIAFLCLEVVSVAIGVVALISVACPLPLCVGDMHPLQNDA*
back to top