prot_L-elsbetiae_contig6304.14942.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6304.14942.1
Unique Nameprot_L-elsbetiae_contig6304.14942.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length187
Homology
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: D7FHU3_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU3_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 6.140e-63
Identity = 103/141 (73.05%), Postives = 118/141 (83.69%), Query Frame = 0
Query:   47 EAEALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYVKICRASRGKL 187
            E  ALKMLEFYFGDSNFGWDRFM++KAGKMGENL+D+S+LMTFNKLKNIVK A LS E G  LIAR+GE SP+LRVSEDKKQIGRA  +TEE+  ER+ARTVQTKGY K++ I I DVEKLF++ GK  YVKIC+A   KL
Sbjct:   53 ETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGGNKL 193          
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A6H5JNF3_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF3_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.850e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0
Query:   46 KEAE--ALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIA 111
            KEAE  ALKMLEFYFGDSNFGWDRFM++KAGKMGE L+D+S+LMTFNKLKNIVK A LS E    L++
Sbjct:  223 KEAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGEKLMDISVLMTFNKLKNIVKKADLSPEEAQALVS 290          
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: D3BHF0_POLPP (Lupus La protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BHF0_POLPP)

HSP 1 Score: 75.9 bits (185), Expect = 6.880e-13
Identity = 44/138 (31.88%), Postives = 79/138 (57.25%), Query Frame = 0
Query:   49 EALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYVKICRASRGK 186
            +  K +E+YF DSN+  D+F+K  A K  E  + + +L TFNK+K++  D        L+LI+   ++S +L++SED K + R  PL +  E+ +  +T+ +KG+ KD   T+  ++  F   GK   V++ + ++ K
Sbjct:   18 KVAKQIEYYFSDSNYPTDKFLKEAAAKNPEGYVGIEVLATFNKIKSMTTD--------LQLISDALKDSDSLQLSEDGKMVKRLNPLPDNEELAK--KTLYSKGWPKDT-TTMETIQDFFGSYGKVLSVRMRKNNKDK 144          
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: Q54TG6_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54TG6_DICDI)

HSP 1 Score: 75.5 bits (184), Expect = 8.940e-13
Identity = 45/132 (34.09%), Postives = 75/132 (56.82%), Query Frame = 0
Query:   48 AEALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYVKI 179
             + LK +E+YF DSNF  D+F++S+A K  +N I + ++ +FN++K I  D        L+LI    ++S  L+VSED K + R +PL E  +     +T+ +KG+ +D   TI  V++ F   G  + V +
Sbjct:    7 TQILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTD--------LQLITEALKKSTRLQVSEDGKMVRRLDPLPENIDC---GKTLYSKGWPEDT--TIEKVQEFFNANGGYKVVSV 125          
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A482RX93_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX93_9ARCH)

HSP 1 Score: 74.7 bits (182), Expect = 1.550e-12
Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 0
Query:   52 KMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKD-AKITIPDVEKLFAETGKCRYVKI 179
            K +EFYF DSN+  D F+K+ A    +  + +S+L+TFN+LKN+  D           +A+  E S  + +S +K ++ RAEPL E  E    +RT+  KGY  D A +TI  + + ++  GK  YVK+
Sbjct:   10 KQVEFYFSDSNYRKDTFLKAAAESDPDGFVAISVLLTFNRLKNLTTDVAE--------VAKAVESSDAVVLSANKDKVKRAEPLPETDES--ASRTLYIKGYPVDNADVTIESIAEQWSPYGKVLYVKM 128          
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A7S0SSA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSA1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.080e-11
Identity = 43/136 (31.62%), Postives = 73/136 (53.68%), Query Frame = 0
Query:   47 EAEALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKI-TIPDVEKLFAETGKCRYVKICR 181
            E+   K +EFYF DSNF  D F+K+ A    E  + +S+++TFNKL+N+  D           +A   E S  + + +DK ++ R+ PL E+   +   +T+  KG+  +  I TI ++ +LF+  G    V++ R
Sbjct:    4 ESAIKKQVEFYFSDSNFRKDTFLKAAADSDPEGFVPISVVLTFNKLRNLTTDEAA--------VANAIENSNVVTLDDDKTRVRRSNPLPEDDTSK--PKTLYVKGFPVEEPIVTIDEITELFSVYGDIAIVRLRR 129          
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A835Z2D4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.750e-11
Identity = 46/135 (34.07%), Postives = 74/135 (54.81%), Query Frame = 0
Query:   48 AEALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAK-ITIPDVEKLFAETGKCRYVKICR 181
            A+  + LEFYFGDSNF  D+F++ +     ++L+ +++LMTFNKLK++  D  +        +    ++S  L VSED  ++GR +  TE    +   RT+  KG+  D   ++I  V  +F   G+  YV I R
Sbjct:   93 AKVQRQLEFYFGDSNFNRDKFLREQVKLSEDSLVPLTVLMTFNKLKSMTADEAV--------VLAAAKQSEVLSVSEDGLRVGRGDGATE-LRYDARPRTIYAKGFGYDCPDLSIEFVTDMFKVFGEVGYVYIRR 218          
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A8J4V333_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V333_9MYCE)

HSP 1 Score: 69.7 bits (169), Expect = 9.960e-11
Identity = 44/131 (33.59%), Postives = 75/131 (57.25%), Query Frame = 0
Query:   49 EALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYVKI 179
            + LK +E+YF DSNF  D+F+++++ K  +  I +  + +FN++K +  D        L+LI  + ++S  L V +D K I R +PL E  E E+   T+ +KG+  D   TI  VE+ F++ GK   V++
Sbjct:   18 KILKQVEYYFSDSNFIRDKFLRAESAKNPDGFISIDTIASFNRMKELSTD--------LQLITDILKKSSRLVVDQDGKMIKRKDPLPENIESEK---TLYSKGWPLDT--TIEKVEQFFSQFGKVLSVRL 135          
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A0S4JIJ0_BODSA (LA RNA-binding protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JIJ0_BODSA)

HSP 1 Score: 67.8 bits (164), Expect = 4.570e-10
Identity = 45/131 (34.35%), Postives = 71/131 (54.20%), Query Frame = 0
Query:   47 EAEALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYV 177
            +A+  K +EFYF D N   D F+K+K  +  E  I +++L+TFN++  + KDA        +++A   + SP L V E+  Q+ RA+PL E   I+  A TV  K     A  T+ D+++ F + G  R V
Sbjct:    8 QAKLQKQVEFYFSDVNIAKDVFLKAKMAESAEGFIPLAVLLTFNRVNAVTKDA--------KVLAESIKASPLLVVDEENLQVRRAQPLPES--IQTDAETVYVKPV--PANSTLEDLQEFFGKFGTVRAV 126          
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: F4QD37_CAVFA (Lupus La protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QD37_CAVFA)

HSP 1 Score: 67.0 bits (162), Expect = 9.810e-10
Identity = 41/133 (30.83%), Postives = 73/133 (54.89%), Query Frame = 0
Query:   49 EALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYVKICR 181
            + +K +E+YF DSNF  D+F+K +A K  E  +++  +  F ++K +  D        L+L+    + S  L+VS D+KQ+ R +PL ++ E     + + +KG+   A+ TI  V++ FA  G    V++ R
Sbjct:   57 KIMKQVEYYFSDSNFPRDKFLKGEAAKNPEGYVNIITIADFKRMKEMTSD--------LQLVTDSLKNSSRLQVSPDEKQVRRTDPLPDDEE--HAKKVLYSKGW--PAETTIETVKEFFAPYGASTSVRLRR 177          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHU3_ECTSI6.140e-6373.05HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JNF3_9PHAE5.850e-2375.00HTH La-type RNA-binding domain-containing protein ... [more]
D3BHF0_POLPP6.880e-1331.88Lupus La protein n=1 Tax=Polysphondylium pallidum ... [more]
Q54TG6_DICDI8.940e-1334.09Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A482RX93_9ARCH1.550e-1236.43Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S0SSA1_9STRA5.080e-1131.62Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A835Z2D4_9STRA6.750e-1134.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J4V333_9MYCE9.960e-1133.59Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A0S4JIJ0_BODSA4.570e-1034.35LA RNA-binding protein, putative n=1 Tax=Bodo salt... [more]
F4QD37_CAVFA9.810e-1030.83Lupus La protein n=1 Tax=Cavenderia fasciculata (s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002344Lupus La proteinPRINTSPR00302LUPUSLAcoord: 53..70
score: 48.48
coord: 140..156
score: 28.34
coord: 79..94
score: 22.73
IPR006630La-type HTH domainSMARTSM00715lacoord: 44..132
e-value: 5.8E-8
score: 40.8
IPR006630La-type HTH domainPFAMPF05383Lacoord: 53..98
e-value: 1.1E-9
score: 38.2
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 40..139
score: 18.034
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 42..140
e-value: 6.5E-20
score: 72.8
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 39..182
NoneNo IPR availablePANTHERPTHR22792:SF115LA-RELATED PROTEIN 7coord: 39..182
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 49..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6304contigL-elsbetiae_contig6304:3608..6406 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6304.14942.1mRNA_L-elsbetiae_contig6304.14942.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6304 3608..6406 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6304.14942.1 ID=prot_L-elsbetiae_contig6304.14942.1|Name=mRNA_L-elsbetiae_contig6304.14942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MDEETKAAGAETEAAPAPVSEEKKAAGAAEAEAAPAPVSEETKKEKEAEA
LKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAG
LSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQT
KGYKKDAKITIPDVEKLFAETGKCRYVKICRASRGKL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002344Lupus_La
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf