prot_L-elsbetiae_contig6263.14871.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6263.14871.1
Unique Nameprot_L-elsbetiae_contig6263.14871.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length62
Homology
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BLAST of mRNA_L-elsbetiae_contig6263.14871.1 vs. uniprot
Match: D7G0T3_ECTSI (Retinoblastoma binding protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T3_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 4.680e-28
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0 
Query:    1 GIGRVIEAHSRAITALCWARGGRRLLSASQDQRLHYWALEPARPELIRVICLDSPIFSALV 61
            GIGRV+EAH+RAITAL WARGGRRLLSAS DQRLHYWALEP RPELIRVICLDSPI SAL+
Sbjct:   58 GIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPPRPELIRVICLDSPIMSALM 118
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6263.14871.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0T3_ECTSI4.680e-2888.52Retinoblastoma binding protein 5 n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 62..62
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..58
e-value: 1.7E-7
score: 32.4
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 6..47
score: 10.469
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 6..40
score: 10.943
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 4..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6263contigL-elsbetiae_contig6263:10851..11036 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6263.14871.1mRNA_L-elsbetiae_contig6263.14871.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6263 10851..11036 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6263.14871.1 ID=prot_L-elsbetiae_contig6263.14871.1|Name=mRNA_L-elsbetiae_contig6263.14871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
GIGRVIEAHSRAITALCWARGGRRLLSASQDQRLHYWALEPARPELIRVI
CLDSPIFSALVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf