prot_L-elsbetiae_contig624.14839.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig624.14839.1
Unique Nameprot_L-elsbetiae_contig624.14839.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length193
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig624.14839.1 vs. uniprot
Match: D8LIH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIH0_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 3.270e-107
Identity = 153/190 (80.53%), Postives = 165/190 (86.84%), Query Frame = 0 
Query:    1 MMGARRT-RRPAAVVTMACALLASSCVRAQEMPGKGMTCWDKRELCDLNCVYATTQASDGSSSLGECSTGCMTAQQSCTDSDETVAYVECAKDCTYTYDGSLTKCNQQVSDVTKNTYGANLDACANIASGVMDDCMEECYGEDRFNGWTPMKEEGKDKDGIDLPGLEDDVWRRPFRSESVIYGRLRGEMD 189
            M GA+RT  R A  V    ALLAS C  AQEMPGKGMTCWDKRELCDLNCVYATT A D   +L +CSTGC+T+Q SCTDS ET+AYVECAKDCT TYDGSLTKCNQ+VSD TKNTYGANLDACANIASG+MDDCME+CYGEDRFNGWTPMKEEGKD +GIDLPGL+D VWRRPFRSESVIYGRLRGE+D
Sbjct:    1 MAGAKRTCGRTAVAVLAVAALLASDCASAQEMPGKGMTCWDKRELCDLNCVYATT-AEDEDFNLTDCSTGCVTSQASCTDSAETLAYVECAKDCTLTYDGSLTKCNQKVSDQTKNTYGANLDACANIASGIMDDCMEDCYGEDRFNGWTPMKEEGKDANGIDLPGLDDGVWRRPFRSESVIYGRLRGELD 189
[Close]
BLAST of mRNA_L-elsbetiae_contig624.14839.1 vs. uniprot
Match: A0A835YM51_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM51_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.920e-31
Identity = 68/175 (38.86%), Postives = 90/175 (51.43%), Query Frame = 0 
Query:   20 LLASSCVRAQEMPGKGMTCWDKRELCDLNCVYATTQASDGSS------SLGECSTGCMTAQQSCTDSDETVAYVECAKDCTYTYDGSLTKCNQQVSDVTKNTYGANLDACANIASGVMDDCMEECY-----GEDRFNGWTPMKEEGKDKDGIDLPGLEDDVWRRPFRSESVIYGR 183
            L+  + V  QEMPGKGM C DK+ELC LNC+  +    D S        L  C   C      C D+ +   Y++CA  C  TYD +L  C Q  S  T  TYG + DACAN+A+  MD+CM  C+      +DR+  W+P +E G       +  L    +RRPFR   V+YGR
Sbjct:   11 LILVAVVVGQEMPGKGMGCSDKQELCSLNCLLPSAGTMDLSGVTVTRDDLNSCLDVCDKDLTQCKDTPDNTKYIDCATVCAKTYDVALNACLQAASATTVGTYGTSQDACANLAAAPMDECMSACFYGADAAQDRYGAWSPEREAGHR-----IASLPRGQFRRPFRDPDVVYGR 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig624.14839.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIH0_ECTSI3.270e-10780.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YM51_9STRA5.920e-3138.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..192
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..25
score: 6.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.813

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig624contigL-elsbetiae_contig624:23630..27024 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig624.14839.1mRNA_L-elsbetiae_contig624.14839.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig624 23469..29738 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig624.14839.1 ID=prot_L-elsbetiae_contig624.14839.1|Name=mRNA_L-elsbetiae_contig624.14839.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
MMGARRTRRPAAVVTMACALLASSCVRAQEMPGKGMTCWDKRELCDLNCV
YATTQASDGSSSLGECSTGCMTAQQSCTDSDETVAYVECAKDCTYTYDGS
LTKCNQQVSDVTKNTYGANLDACANIASGVMDDCMEECYGEDRFNGWTPM
KEEGKDKDGIDLPGLEDDVWRRPFRSESVIYGRLRGEMDAPK*
back to top