prot_L-elsbetiae_contig6226.14819.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig6226.14819.1
Unique Name	prot_L-elsbetiae_contig6226.14819.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	227

Homology

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BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 5.200e-125
Identity = 187/234 (79.91%), Postives = 199/234 (85.04%), Query Frame = 0

Query:    1 MKVLSTVGAMTACASCASAFVTPSSISRVITSSP-----LRMSDAAAAVVE---EAPPAPVKVAMSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFHA 226
            MKV+STVGA  ACASCASAFV PSS SRVI+SSP     LRM++  AA  E   E  P P   AMS S+PFL QPKNLEGMV D+GFDPFGF+T FP KFMREAELKHGRVAMLAVVGWLVSE+VHVPGAAY S+NPVDAMAAVGPGPMLQIF FCGFLEWKFHNGKMTMDNMHEDG  PGDFGFDP+ L+ KPA VREKYQLQEIKNGRLAMSAIGGL+HQSLLL GGVPFHA
Sbjct:    1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKALRMAEEVAAEPEAAVEPEPVPAGPAMSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNEPGDFGFDPMMLAKKPADVREKYQLQEIKNGRLAMSAIGGLIHQSLLLGGGVPFHA 234

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BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA)

HSP 1 Score: 230 bits (586), Expect = 8.340e-74
Identity = 111/169 (65.68%), Postives = 131/169 (77.51%), Query Frame = 0

Query:   57 MSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFH 225
            MSKSLPFL +PK L+G V +  FDPF  S   P  F+RE+ELKHGR+AMLAVVG++VSEL+H+PG AYQ+ NPVDA+  VG  PMLQIF FCGFLE  FH GKMTM +MH DGQ PGDFGFDPL +S  PA + + YQL EIKNGRLAM AI GL+HQS++   GVPF+
Sbjct:    1 MSKSLPFLVKPKQLDGWVGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHKGKMTMMDMHADGQTPGDFGFDPLNVSKDPAKLAQ-YQLSEIKNGRLAMMAISGLIHQSIITGHGVPFN 168

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BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK)

HSP 1 Score: 203 bits (516), Expect = 3.110e-63
Identity = 102/162 (62.96%), Postives = 122/162 (75.31%), Query Frame = 0

Query:   57 MSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQ-VPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLL 217
            MSKS+PFL  PKN  GM+ D GFDPFGFS  F  K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AYQS NP+DA++ VGP P+ QIF FCGFLE+  + GKMTM +M ED +  PG  GFDP+ L        E+ QL+E++NGRLAM AIGGLVH  LL
Sbjct:    1 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNKGKMTMLDMFEDKERKPGFLGFDPMNLGK--GGPSEEMQLKELENGRLAMCAIGGLVHHFLL 160

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BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.480e-53
Identity = 94/171 (54.97%), Postives = 119/171 (69.59%), Query Frame = 0

Query:   48 APPAPVKVAMSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQ-VPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLL 217
            A P PV    SKS+PFL +PKNL+GMV DVGFDP G +     +++REAELK+GRVAMLA +G++V E + +PG  Y   N V A   VGP P++QIF FCGFLE+  H GKMT  +M  DG+  PG+FGFDPL     P+  RE+  L E+KNGRLAM AIGGL+H +L+
Sbjct:  121 AKPQPV---FSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSK-RERLALAELKNGRLAMIAIGGLIHHALV 287

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BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK)

HSP 1 Score: 178 bits (451), Expect = 3.440e-53
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 0

Query:   44 VVEEAPPAPVKVAMSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQ-VPGDFGFDPLRL 182
            + EE   AP  + MSKS+PFL  PKN  GM+ D GFDPFGFS TF  K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AYQS NP++A++ VGP P+ QIF FCGFLE+  + GKMTM +M ED +  PG  GFDP+ L
Sbjct:   32 MAEEGAAAPAPMEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEFTQNKGKMTMLDMFEDKERKPGFLGFDPMNL 171

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BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A1Z5JQG8_FISSO (Light-harvesting complex I chlorophyll a/b binding protein 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQG8_FISSO)

HSP 1 Score: 164 bits (415), Expect = 1.810e-47
Identity = 87/163 (53.37%), Postives = 115/163 (70.55%), Query Frame = 0

Query:   57 MSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDG-QVPGDFGFDPLRLST-KPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLL 217
            MSKS+PFLT PKN  G V DVGFDP GFS  F  K++RE+E+KH R AMLA +G++V + V +PG      + + A AAVGP PMLQIFF  G LE+  +NGK+T++NM  D  +VPG+FGFDPL ++  K A      +L+EIKNGRLAM AIGG++  +++
Sbjct:   32 MSKSIPFLTAPKNTAGWVGDVGFDPLGFSDYFDMKWLRESEIKHSRAAMLASLGFMVQQFVTLPGMP-DVDDSMLAPAAVGPSPMLQIFFGLGVLEFWSNNGKVTIENMFSDSSRVPGNFGFDPLGMAKGKSAEAMADMELKEIKNGRLAMCAIGGMMAHNIV 193

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BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: M2VTV2_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTV2_GALSU)

HSP 1 Score: 164 bits (416), Expect = 2.940e-47
Identity = 83/167 (49.70%), Postives = 112/167 (67.07%), Query Frame = 0

Query:   58 SKSLPFLTQPKNLEGMV-ADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMT-MDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGV 222
            S S+PFL +PKNL+G    DVGFDP   S     +++RE+E+KHGR+ MLA VG++V E VH+PG  + ++  +DA+  V  G + QIF F G LE+  + GKMT +D   +  + PGDFGFDPL L   P A R++Y++ EIKNGRLAM A+GG +H  LL H GV
Sbjct:   49 SLSVPFLERPKNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRICMLAAVGFIVQEFVHLPGEVFSNKVAIDALFQVPSGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQA-RKRYEVAEIKNGRLAMLAVGGFIHHMLLTHQGV 214

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BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 161 bits (407), Expect = 4.030e-46
Identity = 83/166 (50.00%), Postives = 108/166 (65.06%), Query Frame = 0

Query:   58 SKSLPFLTQPKNL-EGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGV 222
            S S+PFL++P N+ E MV   GFDP G ST   A+F++E+E+KHGR+ MLAVVG+LV E+VH+PG  + ++   +A + V  G + QIF  CG  E+  H GKMT  ++  D   PG  GFDPL L   P   + K+QL EIKNGRLAM AIGG +HQ  L   GV
Sbjct:   34 SASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHKGKMTYMDISADKGTPGAMGFDPLNLGKDPEKFK-KFQLNEIKNGRLAMIAIGGFIHQMWLTKQGV 198

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BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: Q9FDZ6_GALSU (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FDZ6_GALSU)

HSP 1 Score: 160 bits (406), Expect = 9.950e-46
Identity = 82/167 (49.10%), Postives = 109/167 (65.27%), Query Frame = 0

Query:   58 SKSLPFLTQPKNLEGMV-ADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMT-MDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGV 222
            S S+PFL +P+NL+G    DVGFDP   S     +++RE+E+KHGR+AMLA +G++V E VH+PG  + ++  VDA   V  G + QIF F G LE+  + GKMT +D   +  + PGDFGFDPL L   P   R +YQ+ EIKNGRLAM A+GG +H   L H GV
Sbjct:   48 SPSVPFLERPQNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRIAMLAALGFIVQEFVHLPGQVFSNKVAVDAFFQVPRGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQT-RRRYQVAEIKNGRLAMLAVGGFIHHMFLTHQGV 213

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BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A7S1D5D0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5D0_CYCTE)

HSP 1 Score: 157 bits (398), Expect = 6.800e-45
Identity = 88/162 (54.32%), Postives = 112/162 (69.14%), Query Frame = 0

Query:   57 MSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSE-LVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDG-QVPGDFGFDPLRLST-KPAAVREKYQLQEIKNGRLAMSAIGGLVHQS 215
            MSKS+PFL  PKNLEG V DVGFDP GFS  F  K++REAELKHGRV+MLA +G++  + L  +PG  +   + + A + VG   MLQI F+ G LE+  + GK+TM +M EDG +VPGD GFDPL L+  K     E  Q +EIKNGRLAM AIGG++H +
Sbjct:   32 MSKSVPFLEAPKNLEGYVGDVGFDPLGFSDYFDMKWLREAELKHGRVSMLATLGFVAQQFLPAIPGYVHVDDSNL-APSVVGLSAMLQIVFYVGILEFWTNKGKVTMLDMFEDGDRVPGDLGFDPLGLAVGKSDEEMELMQYKEIKNGRLAMLAIGGMIHHN 192

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LCR7_ECTSI	5.200e-125	79.91	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A835Z4D2_9STRA	8.340e-74	65.68	Chlorophyll a/b-binding protein domain-containing ...	[more]
A0A6V1U3D5_HETAK	3.110e-63	62.96	Hypothetical protein n=3 Tax=Heterosigma akashiwo ...	[more]
W7TJ16_9STRA	2.480e-53	54.97	Light-harvesting protein n=1 Tax=Nannochloropsis g...	[more]
A0A7S4DC05_HETAK	3.440e-53	62.14	Hypothetical protein (Fragment) n=3 Tax=Heterosigm...	[more]
A0A1Z5JQG8_FISSO	1.810e-47	53.37	Light-harvesting complex I chlorophyll a/b binding...	[more]
M2VTV2_GALSU	2.940e-47	49.70	Light-harvesting complex protein n=1 Tax=Galdieria...	[more]
A0A7S0T6N2_9RHOD	4.030e-46	50.00	Hypothetical protein n=1 Tax=Erythrolobus madagasc...	[more]
Q9FDZ6_GALSU	9.950e-46	49.10	Light-harvesting protein n=1 Tax=Galdieria sulphur...	[more]
A0A7S1D5D0_CYCTE	6.800e-45	54.32	Hypothetical protein n=1 Tax=Cyclophora tenuis Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 67..215 e-value: 5.7E-41 score: 140.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 61..226 e-value: 1.2E-38 score: 134.7
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 12..224
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..226
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 55..221
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 12..224

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig6226	contig	L-elsbetiae_contig6226:626..4946 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig6226.14819.1	mRNA_L-elsbetiae_contig6226.14819.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig6226 599..6041 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig6226.14819.1 ID=prot_L-elsbetiae_contig6226.14819.1|Name=mRNA_L-elsbetiae_contig6226.14819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp
MKVLSTVGAMTACASCASAFVTPSSISRVITSSPLRMSDAAAAVVEEAPP
APVKVAMSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKH
GRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGF
LEWKFHNGKMTMDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKN
GRLAMSAIGGLVHQSLLLHGGVPFHA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln