prot_L-elsbetiae_contig604.14580.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig604.14580.1
Unique Nameprot_L-elsbetiae_contig604.14580.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length208
Homology
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A6H5KIS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS9_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 2.940e-39
Identity = 108/281 (38.43%), Postives = 127/281 (45.20%), Query Frame = 0
Query:    6 GGAGQPTRSECGTTMKRKLGMGADGGEVVWATDATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAP-PDIPAXXXXXXXXXXXXXX-----------------------------------------------------------------------------RSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPLEGELAGEAASAPSSGGGDEEQLGQGVRG-RAAGGPRGWKVFDCYDEH 207
            GG G     E G  M+++LG+ ADG                     YVFLH+R CDHLFVVSDIR+EPVP   P P++ A       XXXXXXX                                                                                 ++YPRLSF   PN RRCG+C TKTAVK S GHPLSDKA L CC+ECF+ML+ D D+ PLEGELAG+ A+ P  G        QG    +AAGGPRGW+VF CYDEH
Sbjct:  162 GGKGGLAVCEQGQRMRKRLGLEADG---------------------YVFLHHRDCDHLFVVSDIRIEPVPVPPPEPELTAVHLSGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGGGRGEGKKEEYPRLSFLSNPNCRRCGICLTKTAVKMSFGHPLSDKASLFCCQECFEMLHLDTDQKPLEGELAGDVATTPPPGDTTSPSPTQGPEASQAAGGPRGWRVFRCYDEH 421          
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: D7FU78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU78_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.620e-33
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 0
Query:  103 QQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPLEGELAGEAASAPSSGGGDEEQLGQGVR-GRAAGGPRGWKVFDCYDEH 207
            ++YPRLSF   P+ RRCG+C TKTAVK SVGHPLSDKA L CC+ECF+ML+ DAD+ PLEGELAG+ A+    G        QG   G+AA GPRGW+VF C+DEH
Sbjct:  883 EEYPRLSFLSNPHCRRCGICLTKTAVKMSVGHPLSDKASLFCCQECFEMLHLDADQKPLEGELAGDVATTSPPGDTTSPSPPQGPEAGQAAAGPRGWRVFRCHDEH 988          
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A6T6L6W4_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6L6W4_9RHOD)

HSP 1 Score: 58.5 bits (140), Expect = 1.180e-6
Identity = 33/108 (30.56%), Postives = 50/108 (46.30%), Query Frame = 0
Query:   48 LGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYD 155
            L   YVF+H  +C+HL +++DIRM         DI                   A+QYPRL  R +   R C +C    A K   G   + ++P   CE C+++L+Y+
Sbjct:  247 LARFYVFVHEEICEHLIMITDIRML--------DINVDLIN-------------AEQYPRLMSRARTMWRSCDICSNGRASKVVFGDRFAPESPCFFCEPCYNLLHYN 333          
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A673ZTA6_SALTR (snRNA-activating protein complex subunit 3 n=3 Tax=Salmoninae TaxID=504568 RepID=A0A673ZTA6_SALTR)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-5
Identity = 32/124 (25.81%), Postives = 51/124 (41.13%), Query Frame = 0
Query:   38 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 161
            D    DL+  +G  Y+F H   C+H+ +++DIR+    D     +                      YP L+ + +  +R+C VC+       +   P +   P   CE CF ML+YD   N L
Sbjct:  136 DTRFYDLKVKVGYPYLFCHQGDCEHVVIITDIRLTHKDDCLDRKL----------------------YPLLTHKHRVMTRKCAVCHVYIGRWLTTNDPFAPNDPCLFCERCFRMLHYDKKGNKL 237          
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: H2TJN2_TAKRU (snRNA-activating protein complex subunit 3 n=3 Tax=Takifugu TaxID=31032 RepID=H2TJN2_TAKRU)

HSP 1 Score: 55.1 bits (131), Expect = 1.880e-5
Identity = 32/124 (25.81%), Postives = 54/124 (43.55%), Query Frame = 0
Query:   38 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 161
            D    DL+  +G  Y++ H   C+HL +++DIR+    D     +                      YP L+ + +  +++C VC+       + G  L+   P   C++CF ML+YDA  N L
Sbjct:  264 DTRFVDLKVKVGFPYLYCHQGDCEHLIIITDIRLAHRSDCLDKKL----------------------YPLLTHKHRFTTQKCSVCHVFIGRWFTTGDRLAPSDPCLFCDKCFRMLHYDAQGNKL 365          
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A6P3W2M2_CLUHA (snRNA-activating protein complex subunit 3 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3W2M2_CLUHA)

HSP 1 Score: 54.7 bits (130), Expect = 2.540e-5
Identity = 35/124 (28.23%), Postives = 54/124 (43.55%), Query Frame = 0
Query:   38 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 161
            D T  DLR  +G  Y + H   C+H+ V++DIR+    D     +                      YP LS + +  +R+C VC+   +   +    L+   P   C++CF ML+YDA  N L
Sbjct:  267 DMTFYDLRMKIGYPYFYCHQGDCEHVMVLTDIRLIHPDDCRDRTL----------------------YPLLSHKHRVMTRKCCVCHLYISRWITTNDRLAPMDPCLFCDKCFRMLHYDAQGNKL 368          
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A4W5Q0G3_9TELE (snRNA-activating protein complex subunit 3 n=19 Tax=Salmonidae TaxID=8015 RepID=A0A4W5Q0G3_9TELE)

HSP 1 Score: 54.7 bits (130), Expect = 2.580e-5
Identity = 32/124 (25.81%), Postives = 51/124 (41.13%), Query Frame = 0
Query:   38 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 161
            D    DL+  +G  Y+F H   C+H+ +++DIR+    D     +                      YP L+ + +  +R+C VC+       +   P +   P   CE CF ML+YD   N L
Sbjct:  278 DTRFYDLKVKVGYPYLFCHQGDCEHVVIITDIRLAHKDDCLDRKL----------------------YPLLTHKHRVMTRKCAVCHVYIGRWLTTNDPFAPNDPCLFCERCFRMLHYDKKGNKL 379          
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: UPI00148F9B96 (snRNA-activating protein complex subunit 3 isoform X1 n=3 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148F9B96)

HSP 1 Score: 54.3 bits (129), Expect = 3.430e-5
Identity = 31/124 (25.00%), Postives = 54/124 (43.55%), Query Frame = 0
Query:   38 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 161
            D   ADL+  +G  Y++ H   C+HL +++DIR+    D     +                      YP L+ + +  +++C VC+       +    ++   P   C++CF ML+YDA  N L
Sbjct:  266 DTRFADLKVKVGFPYLYCHQGDCEHLVIITDIRLTHANDCLDKKL----------------------YPLLTHKHRVVTKKCAVCHVYIGRWFTTNDKVAPSDPCLFCDKCFRMLHYDAQGNKL 367          
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A3B3SSC6_9TELE (snRNA-activating protein complex subunit 3 n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SSC6_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 4.640e-5
Identity = 31/120 (25.83%), Postives = 54/120 (45.00%), Query Frame = 0
Query:   42 ADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 161
            +DLR  +G  Y + H   C+H+ +++DIR+    D    ++                      YP L+++ +  +R+C VC+   +   +    L+   P   CE+CF ML+YD   N L
Sbjct:  271 SDLRLKVGYPYQYCHQGDCEHVVLITDIRIAHQDDCLDMNL----------------------YPLLAYKHRVKTRKCSVCHMYISRWITTNDSLAPMDPCLFCEQCFRMLHYDKQGNKL 368          
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A2U9BP30_SCOMX (snRNA-activating protein complex subunit 3 n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A2U9BP30_SCOMX)

HSP 1 Score: 53.5 bits (127), Expect = 6.260e-5
Identity = 30/124 (24.19%), Postives = 53/124 (42.74%), Query Frame = 0
Query:   38 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 161
            D    DL   +G  Y++ H   C+HL +++DIR+  + D     +                      YP L+ + +  +++C VC+       +     +   P   C++CF ML+YDA+ N L
Sbjct:  266 DTRFVDLNVKVGFPYLYCHQGDCEHLVIITDIRLSHMNDCLDKKL----------------------YPLLTHKHRVTTQKCAVCHVFIGRWYTTNDQFAPSDPCLFCDKCFRMLHYDAEGNKL 367          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KIS9_9PHAE2.940e-3938.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU78_ECTSI1.620e-3361.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6T6L6W4_9RHOD1.180e-630.56Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A673ZTA6_SALTR1.660e-525.81snRNA-activating protein complex subunit 3 n=3 Tax... [more]
H2TJN2_TAKRU1.880e-525.81snRNA-activating protein complex subunit 3 n=3 Tax... [more]
A0A6P3W2M2_CLUHA2.540e-528.23snRNA-activating protein complex subunit 3 n=1 Tax... [more]
A0A4W5Q0G3_9TELE2.580e-525.81snRNA-activating protein complex subunit 3 n=19 Ta... [more]
UPI00148F9B963.430e-525.00snRNA-activating protein complex subunit 3 isoform... [more]
A0A3B3SSC6_9TELE4.640e-525.83snRNA-activating protein complex subunit 3 n=1 Tax... [more]
A0A2U9BP30_SCOMX6.260e-524.19snRNA-activating protein complex subunit 3 n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022042snRNA-activating protein complex, subunit 3PFAMPF12251zf-SNAP50_Ccoord: 102..161
e-value: 1.4E-9
score: 37.9
IPR022042snRNA-activating protein complex, subunit 3PANTHERPTHR13421FAMILY NOT NAMEDcoord: 38..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig604contigL-elsbetiae_contig604:10272..12647 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig604.14580.1mRNA_L-elsbetiae_contig604.14580.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig604 10076..12662 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig604.14580.1 ID=prot_L-elsbetiae_contig604.14580.1|Name=mRNA_L-elsbetiae_contig604.14580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
MRGGSGGAGQPTRSECGTTMKRKLGMGADGGEVVWATDATVADLRPMLGE
RYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAANPAAAAAAAALAARS
PAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFD
MLYYDADRNPLEGELAGEAASAPSSGGGDEEQLGQGVRGRAAGGPRGWKV
FDCYDEH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022042snRNA-activating_su3