prot_L-elsbetiae_contig602.14549.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig602.14549.1
Unique Nameprot_L-elsbetiae_contig602.14549.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length128
Homology
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BLAST of mRNA_L-elsbetiae_contig602.14549.1 vs. uniprot
Match: D8LCA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 9.050e-29
Identity = 66/153 (43.14%), Postives = 87/153 (56.86%), Query Frame = 0 
Query:    4 EILQDLYREIVEKGPDFFSMHDTTVDAPFRFVSESFYQRLQLPSGCLLGKPLQTIIDPRDQWRLRTMLGRFVGEESGATGVTG-----------------------------AVQGDGTLVELRVVCGGGAVCDSSMSIAVGSEGLIVITRLR 127
            E + ++YR+IVE GPD FS+H TT+DAPF FVS+S   + QLPS  LLGKPL+T++DP D   L T L   +G    + G +G                                G GT+VEL V+CGG A C +SMSIA+G  GLIV+TR++
Sbjct:   10 EDVLEVYRDIVENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNSRDGGXXXXXXXXXXXXXXXXXXXXXXXVAVGSGTVVELNVMCGG-ASCLASMSIALGCRGLIVVTRMQ 161
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BLAST of mRNA_L-elsbetiae_contig602.14549.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.010e-23
Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:    2 DLEILQDLYREIVEKGPDFFSMHDTTVDAPFRFVSESFYQRLQLPSGCLLGKPLQTIIDPRDQWRLRTMLGRFVGEESGATGVTGAVQGDGTLVELRVVCGGGAVCDSSMSIAVGSEGLIVITRL 126
            ++EIL  LY+ +VE+GPD FS H    DAPF F  E+++ +LQL     +GKPL +I+DP D   L   L   +  +   T +  +  G G LV+LRV CG    C +SMS+ +GS+GL+V+TRL
Sbjct:   45 EVEILS-LYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANK---TNIGDSEPGSGKLVKLRVSCGS-ISCSASMSMVIGSQGLVVVTRL 164
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BLAST of mRNA_L-elsbetiae_contig602.14549.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.170e-18
Identity = 47/124 (37.90%), Postives = 72/124 (58.06%), Query Frame = 0 
Query:    3 LEILQDLYREIVEKGPDFFSMHDTTVDAPFRFVSESFYQRLQLPSGCLLGKPLQTIIDPRDQWRLRTMLGRFVGEESGATGVTGAVQGDGTLVELRVVCGGGAVCDSSMSIAVGSEGLIVITRL 126
            +E+L+ L + IVE GPD FS+H+ T+DAPF ++ ++F  RLQ+P   ++G+ L +I+D R+   LR  + + + E                 V    +  G   C++SMSIA GS GLIV+TRL
Sbjct:   51 VELLK-LCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRL 173
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig602.14549.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCA0_ECTSI9.050e-2943.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN98_9PHAE1.010e-2343.20PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRF4_9PHAE1.170e-1837.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.450.20coord: 2..124
e-value: 5.3E-6
score: 28.5
IPR035965PAS domain superfamilySUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 4..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig602contigL-elsbetiae_contig602:5849..9180 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig602.14549.1mRNA_L-elsbetiae_contig602.14549.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig602 5777..10849 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig602.14549.1 ID=prot_L-elsbetiae_contig602.14549.1|Name=mRNA_L-elsbetiae_contig602.14549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MDLEILQDLYREIVEKGPDFFSMHDTTVDAPFRFVSESFYQRLQLPSGCL
LGKPLQTIIDPRDQWRLRTMLGRFVGEESGATGVTGAVQGDGTLVELRVV
CGGGAVCDSSMSIAVGSEGLIVITRLR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf