prot_L-elsbetiae_contig600.14525.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig600.14525.1
Unique Nameprot_L-elsbetiae_contig600.14525.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length282
Homology
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BLAST of mRNA_L-elsbetiae_contig600.14525.1 vs. uniprot
Match: D8LNA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA8_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 5.350e-89
Identity = 177/295 (60.00%), Postives = 200/295 (67.80%), Query Frame = 0 
Query:    1 MQSLVLMDDSYGDTGHSRPT----GPATGDRQLLPLGLVQKPSA---GGSTRNGSATGATARQQKQT--PRARPA---VDGCPSTLPPLPEGPPVMVLFPATLHLAIFLVPAPPATIVSAVMTLVAILGAWGXXXXXXVVSAAGVGSGLAAGFLVGLGVRSRPVGGWGYATLSVLGIALLGGGQPSATLGVSLALSTFWRSGWWLYLQPECVPVLSIVPGM-ADVALGFLLSSVLQIHRTPPPQQQQPQEGPQPSVLPQPETHSTAAN--RAPPLQADMWNAVTPPGLAGLRGRR 280
            MQSLVL+DD      +SRP     GPA GDR LLPLGL+ KP A   G          A  R Q+ T  P + P     +GCPSTLPP P GPPVMVLFPATL L+IFL P PPAT+ S V+TL+AILG+WGXXXX  +VSAAGVGSGLAAG   GLGVRSRPVGGWG+  LSVLGIALLGGG+ S T G+SL LST WR GWWLY+QPEC PVL ++ G  ADVALGFLL+S+LQIHR+P                      + AA+   A   QADMWNAVTPPGLAGLRGRR
Sbjct:    1 MQSLVLVDD------YSRPAAATAGPAKGDRSLLPLGLISKPPAAEHGTGXXXXXXXXAAGRPQRPTGEPLSDPLYVRAEGCPSTLPPPPAGPPVMVLFPATLPLSIFLAPPPPATLASGVLTLLAILGSWGXXXX--LVSAAGVGSGLAAGLTAGLGVRSRPVGGWGFTGLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQIHRSPSXXXXXXXXXXXXXXX---XVSAAAAHDHHASGSQADMWNAVTPPGLAGLRGRR 284
[Close]
BLAST of mRNA_L-elsbetiae_contig600.14525.1 vs. uniprot
Match: A0A6H5LJL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJL3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.970e-17
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:  161 SVLGIALLGGGQPSATLGVSLALSTFWRSGWWLYLQPECVPVLSIVPGM-ADVALGFLLSSVLQ 223
            SVLGIALLGGG+ S T G+SL L+T WR GWWLY+QPEC PV  ++ G  ADVALGFLL+S+LQ
Sbjct: 1216 SVLGIALLGGGKASLTFGMSLGLTTLWRHGWWLYVQPECAPVFFLLSGTTADVALGFLLTSLLQ 1279
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig600.14525.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNA8_ECTSI5.350e-8960.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LJL3_9PHAE1.970e-1768.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 123..145
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 118..122
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 157..182
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 223..281
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 146..156
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..92
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 93..117
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 202..222
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 183..201
NoneNo IPR availableTMHMMTMhelixcoord: 93..115
NoneNo IPR availableTMHMMTMhelixcoord: 125..147
NoneNo IPR availableTMHMMTMhelixcoord: 154..176
NoneNo IPR availableTMHMMTMhelixcoord: 200..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig600contigL-elsbetiae_contig600:17397..19534 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig600.14525.1mRNA_L-elsbetiae_contig600.14525.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig600 16737..20021 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig600.14525.1 ID=prot_L-elsbetiae_contig600.14525.1|Name=mRNA_L-elsbetiae_contig600.14525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=282bp
MQSLVLMDDSYGDTGHSRPTGPATGDRQLLPLGLVQKPSAGGSTRNGSAT
GATARQQKQTPRARPAVDGCPSTLPPLPEGPPVMVLFPATLHLAIFLVPA
PPATIVSAVMTLVAILGAWGWGWGWGVVSAAGVGSGLAAGFLVGLGVRSR
PVGGWGYATLSVLGIALLGGGQPSATLGVSLALSTFWRSGWWLYLQPECV
PVLSIVPGMADVALGFLLSSVLQIHRTPPPQQQQPQEGPQPSVLPQPETH
STAANRAPPLQADMWNAVTPPGLAGLRGRRL*
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