prot_L-elsbetiae_contig5954.14445.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5954.14445.1
Unique Nameprot_L-elsbetiae_contig5954.14445.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length197
Homology
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: D7G2V1_ECTSI (SWIB/MDM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.360e-26
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0
Query:   77 VTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLV 134
            VTKAVWAYIRA SLQDPKDRRKIRNDDKMF VFKCKTMNMMHIAKKLSPHLKK SDLV
Sbjct:   56 VTKAVWAYIRAESLQDPKDRRKIRNDDKMFPVFKCKTMNMMHIAKKLSPHLKKLSDLV 113          
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: A0A6H5L1F8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.390e-26
Identity = 59/74 (79.73%), Postives = 61/74 (82.43%), Query Frame = 0
Query:   77 VTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLVVG-------DTESCSS 143
            VTKAVWAYIRA SLQDPKD RKIRND+KMFRVFKCKTMNMMHIAKKLSPHLKK SDLV         DTE+ SS
Sbjct:  120 VTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKVSDLVESGAPNEEVDTEASSS 193          
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: V4NNF9_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4NNF9_EUTSA)

HSP 1 Score: 71.2 bits (173), Expect = 3.990e-11
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 0
Query:   56 QLSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLVVGDTESC 141
            QLSP L +F+G+ +  +AR +VTK +WAYI+   LQDPKDRRKI  D+ +  +F+ K++NM  ++K L+ H+       +GD + C
Sbjct:  125 QLSPQLEKFLGTSQ--LARTEVTKKLWAYIKEKDLQDPKDRRKILCDESLHSLFRVKSINMFQMSKALTKHIWP-----LGDGDGC 203          
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: UPI000CED48BA (DNA ligase 1 isoform X1 n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED48BA)

HSP 1 Score: 71.2 bits (173), Expect = 4.800e-11
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 0
Query:   56 QLSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLVVGDTESC 141
            QLSP L +F+G+ +  +AR +VTK +WAYI+   LQDPKDRRKI  D+ +  +F+ K++NM  ++K L+ H+       +GD + C
Sbjct:  125 QLSPQLEKFLGTSQ--LARTEVTKKLWAYIKEKDLQDPKDRRKILCDESLHSLFRVKSINMFQMSKALTKHIWP-----LGDGDGC 203          
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: A0A7N2MYS9_QUELO (Uncharacterized protein n=5 Tax=Fagaceae TaxID=3503 RepID=A0A7N2MYS9_QUELO)

HSP 1 Score: 70.5 bits (171), Expect = 9.290e-11
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 0
Query:   57 LSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHL 127
            LSP L EF+G  E  +AR  V K VWAYIR  +LQDPK+RR IR D+ +  +F+ KT+NM  + K LS H+
Sbjct:  133 LSPKLQEFVGEPE--LARTQVVKKVWAYIRENNLQDPKNRRNIRCDESLHTLFRVKTINMFQMNKALSKHI 201          
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: UPI00098E01B3 (upstream activation factor subunit spp27-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E01B3)

HSP 1 Score: 69.3 bits (168), Expect = 1.340e-10
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   57 LSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLVVGDTESCSSXXXXXXAAPKGEDEVDERELR 164
            LSP L EF+G  ET +AR +V K +WAYIR  SLQDP +RRKI  D++M  +F  K ++M  + K LS H+         D+E+ S         PK E E  +   R
Sbjct:  118 LSPQLQEFLG--ETELARTEVVKRIWAYIRENSLQDPSNRRKILCDERMQNLFNVKKIDMFQMNKALSKHIWPL------DSEAGSIKPAQKERKPKKEREASDESPR 217          
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: UPI00098E144D (upstream activation factor subunit UAF30-like isoform X1 n=3 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E144D)

HSP 1 Score: 69.3 bits (168), Expect = 1.450e-10
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 0
Query:   57 LSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHL 127
            LSP L EF+G  ET +AR +V K +WAYIR  SLQDP +RRKI  D++M  +F  K+++M  + K LS H+
Sbjct:  131 LSPQLQEFLG--ETELARTEVVKRIWAYIRENSLQDPSNRRKILCDERMHNLFNVKSIDMFQMNKALSKHI 199          
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: UPI00053C9E86 (golgin subfamily A member 6-like protein 22 isoform X1 n=5 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C9E86)

HSP 1 Score: 70.1 bits (170), Expect = 1.450e-10
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 0
Query:   55 FQLSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSD 132
            +QLSP L  F+GS +  +AR +V K +WAYIR  +LQDPK++R I  D+ +  +FK K +NM  ++K LS H+   SD
Sbjct:  123 WQLSPQLENFIGSSQ--LARTEVVKKIWAYIREKNLQDPKNKRNIICDESLHSLFKVKAINMFQMSKALSKHIWPLSD 198          
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: A0A7C9AVY7_OPUST (Uncharacterized protein n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AVY7_OPUST)

HSP 1 Score: 68.2 bits (165), Expect = 1.700e-10
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 0
Query:   57 LSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHL 127
            LSP L EF+G  E  +AR +V K +W YIR   LQDPK+RR I+ DDK+  +F+  T+NM  + K LS H+
Sbjct:   42 LSPQLQEFVGVPE--LARTEVVKKLWEYIREKDLQDPKNRRNIKCDDKLHSIFRVDTINMFQMNKALSKHI 110          
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: A0A8K0DRJ8_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0DRJ8_9ROSA)

HSP 1 Score: 69.3 bits (168), Expect = 2.230e-10
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0
Query:   57 LSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHL 127
            LSP L EF+G  E +MAR +V K +W+YIR   LQDPK+RR I+ D+ ++ +F+  T+NM  + K LS H+
Sbjct:  134 LSPQLQEFVG--EPVMARTEVVKKIWSYIREHDLQDPKNRRNIKCDESLYALFRVNTINMFQMNKALSKHI 202          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2V1_ECTSI1.360e-2694.83SWIB/MDM2 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L1F8_9PHAE7.390e-2679.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
V4NNF9_EUTSA3.990e-1143.02Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
UPI000CED48BA4.800e-1143.02DNA ligase 1 isoform X1 n=2 Tax=Eutrema salsugineu... [more]
A0A7N2MYS9_QUELO9.290e-1152.11Uncharacterized protein n=5 Tax=Fagaceae TaxID=350... [more]
UPI00098E01B31.340e-1040.74upstream activation factor subunit spp27-like n=1 ... [more]
UPI00098E144D1.450e-1050.70upstream activation factor subunit UAF30-like isof... [more]
UPI00053C9E861.450e-1046.15golgin subfamily A member 6-like protein 22 isofor... [more]
A0A7C9AVY7_OPUST1.700e-1049.30Uncharacterized protein n=2 Tax=Opuntia streptacan... [more]
A0A8K0DRJ8_9ROSA2.230e-1047.89Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..40
NoneNo IPR availablePANTHERPTHR13844:SF52SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEINcoord: 9..139
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 9..139
IPR019835SWIB domainSMARTSM00151swib_2coord: 51..132
e-value: 4.4E-25
score: 99.3
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 55..127
e-value: 8.3E-22
score: 76.9
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10coord: 45..133
e-value: 6.0E-24
score: 85.6
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 54..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5954contigL-elsbetiae_contig5954:5956..7062 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5954.14445.1mRNA_L-elsbetiae_contig5954.14445.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5954 5905..7231 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5954.14445.1 ID=prot_L-elsbetiae_contig5954.14445.1|Name=mRNA_L-elsbetiae_contig5954.14445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp
MLEGEGDGEDQEEEEGEEQEEEEEEEEEEEEEEEEEEGEEPAAVKAKAKT
KRTDFQLSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIR
NDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLVVGDTESCSSSSSSSSA
APKGEDEVDERELRLPWVCNNYCACSLAVLGGMSDSVCGEPRKTRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR003121SWIB_MDM2_domain
IPR036885SWIB_MDM2_dom_sf