prot_L-elsbetiae_contig5907.14381.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5907.14381.1
Unique Nameprot_L-elsbetiae_contig5907.14381.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length354
Homology
BLAST of mRNA_L-elsbetiae_contig5907.14381.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 5.100e-64
Identity = 160/378 (42.33%), Postives = 208/378 (55.03%), Query Frame = 0
Query:    1 MMVHDIRGGKRLVPHFRVTVRDLLRLLVEEEWGRTFTRKAAGDAFNSITINPRESWLAAASRLVQYYRASTVDTDAPYASEVPYMWSLMTATQLDLLQGKTLELCIASPFDRQGKEAQLQMRKEQYEPTLEAMPVIRQELGLQHMVNRGEFVREIHIKFSQNLAKDAGKYTQPAASGSRQTDVNLLRSNKIPIAMRMSSSQALSHMDQRKPSA-LCAVAGEGDGE------------------EPVASAGHKTQDEQPVA----EHLAAMDPPSEDNRRKRRWTDKHMSFSSPHSYIESSRSRQRRSSPDNRSISSSSRQEGVPR--RQQGTSSQGASAGGGHTQERSSGRQKPMPTEELPLDAPRPGTAPKAIDAYI 353
            M +HD+RGGKR VP   VTV D LRL +EEEW +  T+ AA  AFNSI I P+ESWLA A R++Q YRASTVD   P+ +E  Y WS ++A QL+L+Q KT+ELCI S  DR  KEA LQ+++E + P LEAMPV++  +GLQ M  RG  V+ I  KFSQ LAKDAGKY QP+    +  +VN L+SNK+PI +        +  D RKP+A LCA+    D                      V   G     + P      E L A+  P + + RKR+WTD+           E+SR+ + R S D+R           PR   +QGT S G              R++ MP  ELPLDAP+P +AP+ I  YI
Sbjct:  296 MKIHDLRGGKRSVPQTHVTVMDFLRLFLEEEWRKHATKVAASTAFNSIQIRPQESWLAVAERVIQIYRASTVDPALPFLTEETYFWSQLSADQLELIQEKTIELCIPSTTDRAAKEALLQVQREYHGPRLEAMPVVKHLVGLQQMNERGALVKSIFKKFSQGLAKDAGKYLQPSQQP-KTAEVNTLKSNKMPIHLAAQQLPTRTSADSRKPAAPLCAIGDADDNNTFEDXXXXXXXXXXIIDTSRVDFEGTFGNFDYPSGTSGTEQLMALAHP-DGSTRKRQWTDQ-----------ETSRAARPRRSIDDRP--------NAPRLSERQGTFSPGTXXXXXXXXX----RKRAMPKAELPLDAPKPDSAPEEIKRYI 648          
BLAST of mRNA_L-elsbetiae_contig5907.14381.1 vs. uniprot
Match: A0A6H5KW13_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW13_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 4.550e-49
Identity = 130/355 (36.62%), Postives = 201/355 (56.62%), Query Frame = 0
Query:    1 MMVHDIRGGKRLVPHFRVTVRDLLRLLVEEEWGRTFTRKAAGDAFNSITINPRESWLAAASRLVQYYRASTVDTDAPYASEVPYMWSLMTATQLDLLQGKTLELCIASPFDRQGKEAQLQMRKEQYEPTLEAMPVIRQELGLQHMVNRGEFVREIHIKFSQNLAKDAGKYTQPAASGSRQT-DVNLLRSNKIPIAMRMSSSQALSHMDQRKPSALCAVAGEGDGEEPVASAGHKTQD-----------EQPVAEHLAAMDPPSEDNRRKRRWTDKHMSFSSPHSYIESSRSRQRRSSPDNRSISSSSRQEGVPRRQQGTSSQGASAGGGHTQ-ERSSGRQKPMPTEELPLDAPRP 342
            M++HD+RGGK+ +PH  V+ RD+LRL++EEE+ ++ T++ A   F+++++ P++SW+AA +R++Q YRA+T D +APYASE  + WS ++  QL+LL GK +++C+ S  DR  ++A+L +++  YEP L AMP+++  LGL +M  R  FV+ I+  F+  L +D GKY    +  + Q+ DV+ ++SN+ PI +  S S         KP AL AV   GD E+    A + T D            QP  + LAA+  P    R+++R  D+H S ++P         R +R   D  +          P   Q T S GA   GG    + S  R  PMP  ELP DAP+P
Sbjct:  294 MLIHDLRGGKQPMPHHLVSARDILRLVMEEEYQKSATKQTAALVFDNLSVQPKDSWVAAIARVLQSYRAATADPEAPYASEDFHCWSQLSTDQLELLLGKIIQVCVTSDADRTAQQARLLVKRTTYEPQLNAMPIVKHNLGLPNMRRRRGFVKSIYTDFAHVLTRDTGKYDVTLSKTAGQSADVHAVQSNRRPIRLHQSPSPT--QRGAHKPGALFAV---GDDED--FDATNDTSDGFNAFNSFDTSSQPP-DQLAALASPGAFTRKRQR-DDQHQSPAAP---------RPKRHFNDRPTTQR-------PVGGQRTFSSGAQPRGGRNHGQHSRRRAMPMPKAELPADAPKP 623          
BLAST of mRNA_L-elsbetiae_contig5907.14381.1 vs. uniprot
Match: A0A6H5KGS7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS7_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.720e-45
Identity = 96/193 (49.74%), Postives = 131/193 (67.88%), Query Frame = 0
Query:   27 LVEEEWGRTFTRKAAGDAFNSITINPRESWLAAASRLVQYYRASTVDTDAPYASEVPYMWSLMTATQLDLLQGKTLELCIASPFDRQGKEAQLQMRKEQYEPTLEAMPVIRQELGLQHMVNRGEFVREIHIKFSQNLAKDAGKYTQPAASGSRQTDVNLLRSNKIPIAMRMSSSQALSHM-DQRKPSA-LCAV 217
            ++EEEW +  T+ AA  AFNSI I P+ESWLA A R++Q YRASTVD   P+ +E    WS ++A QL+L+Q KT+ELCI S  DR  KE  LQ++++ + P LE MPV++  +GL+HM +RG  V+ I  KFSQ LAKDAGKY QP+       +VN L+SNK+PI  R+++ Q  +   D RKP+A  CA+
Sbjct:   22 VLEEEWRKHATKVAASTAFNSIQIRPKESWLAVAERVIQIYRASTVDPGLPFLTEETNFWSQLSADQLELIQEKTIELCIPSTTDRAAKETLLQVQRDYHGPQLEVMPVVKHLVGLRHMNDRGALVKSIFKKFSQGLAKDAGKYLQPSQQP-WTAEVNTLKSNKMPI--RLAAQQLPTRTSDSRKPAAPFCAI 211          
BLAST of mRNA_L-elsbetiae_contig5907.14381.1 vs. uniprot
Match: A0A6H5JPM0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPM0_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.620e-36
Identity = 88/196 (44.90%), Postives = 116/196 (59.18%), Query Frame = 0
Query:    1 MMVHDIRGGKRLVPHFRVTVRDLLRLLVEEEWGRTFTRKAAGDAFNSITINPRESWLAAASRLVQYYRASTVDTDAPYASEVPYMWSLMTATQLDLLQGKTLELCIASPFDRQGKEAQLQMRKEQYEPTLEAMPVIRQELGLQHMVNRGEFVREIHIKFSQNLAKDAGKYTQPAASGSRQTDVNLLRSNKIPIAMR 196
            M++HD+RGGKR VPH  VT  DLL L+ EEE     TR+AA  AFN+I I P+ES  AA  RLVQY R S+VD DAPY +E  Y   L+    L +L+ K+L+LC     DR   EAQL   ++ Y   L  M  IR ELG  +MV RG   ++I   FS  ++++AGK    A   + +  ++ L SNKIP+  R
Sbjct:  337 MLIHDVRGGKRYVPHHLVTAVDLLWLVAEEEAREHATRRAAIAAFNNIVIGPKES--AAQGRLVQYLRVSSVDLDAPYTTEEEYFRQLLAMRDLQVLEEKSLQLCFPEWSDRMPWEAQLYTLRDTYRQELNNMQAIRHELGSPYMVQRGRSTKKIFTNFSNTISQEAGKCKTAAPRPAAK--MSALASNKIPLQTR 528          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5907.14381.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KNP4_9PHAE5.100e-6442.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KW13_9PHAE4.550e-4936.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGS7_9PHAE3.720e-4549.74Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JPM0_9PHAE1.620e-3644.90Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5907contigL-elsbetiae_contig5907:3452..4513 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5907.14381.1mRNA_L-elsbetiae_contig5907.14381.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5907 3445..4513 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5907.14381.1 ID=prot_L-elsbetiae_contig5907.14381.1|Name=mRNA_L-elsbetiae_contig5907.14381.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=354bp
MMVHDIRGGKRLVPHFRVTVRDLLRLLVEEEWGRTFTRKAAGDAFNSITI
NPRESWLAAASRLVQYYRASTVDTDAPYASEVPYMWSLMTATQLDLLQGK
TLELCIASPFDRQGKEAQLQMRKEQYEPTLEAMPVIRQELGLQHMVNRGE
FVREIHIKFSQNLAKDAGKYTQPAASGSRQTDVNLLRSNKIPIAMRMSSS
QALSHMDQRKPSALCAVAGEGDGEEPVASAGHKTQDEQPVAEHLAAMDPP
SEDNRRKRRWTDKHMSFSSPHSYIESSRSRQRRSSPDNRSISSSSRQEGV
PRRQQGTSSQGASAGGGHTQERSSGRQKPMPTEELPLDAPRPGTAPKAID
AYIR
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