prot_L-elsbetiae_contig5841.14295.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5841.14295.1
Unique Nameprot_L-elsbetiae_contig5841.14295.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length648
Homology
BLAST of mRNA_L-elsbetiae_contig5841.14295.1 vs. uniprot
Match: D7FV49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV49_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.520e-42
Identity = 172/388 (44.33%), Postives = 196/388 (50.52%), Query Frame = 0
Query:  266 SGRRRSVRGVRAGGALLEHEDGGASRQAPQ--APLAQQACGRGGXXXXXXXXXXXGAWDVTTGGARGEKGAQTAQGGVVNGGQGQTAIMANLLNKCMETVRAEVPLEDALLPPLESLAAALADAEGCVLKNDAVRAAVDAGVRRRAVHSERGKSAAAGPRVVRLCAYDFSTVGMPLDTTVGSEQPGGGGTAVTTAVAFQCAGTEN--RRITFILRAXXXXXXXXXXXSG-LAAWRVLLRELRAAXXXXXXXXXXXXSDSRGAGVGTSCRARTAPTXXXXXXRGAARLGYLLARERETSNAARVLLGELEPLERL-EGPICSALRDRLASLLSSLIRFTLRIRLDAPPEKLTRVPAVLPLLPPSGGHXXXXXXXRRRAEVSRPSHFSKV 647
            S RR+S+RG RAGG+LLE      +  APQ  AP+  Q    GGXXXXXX        +   GGA+        QGG V         MA LLNKC+E   AEVP  D +LP L  L+ A  DAE C LKN     A D  + RR      G   A  PRVVRLCA++FSTVGMPLDT  GSE            V       EN  RR   +L+            S  L AWR    E+RAA   XXXXXXXXX            + R                     +E+E + A  VLLGELEPLER  EG + S LRDRLAS+LSSLIRF LRIRLDAPPE+LTR P  LP    S G        +RRAEV  PSHFSKV
Sbjct: 1336 STRRKSIRGSRAGGSLLEE-----NTAAPQVGAPVFLQEGPGGGXXXXXXGSGRALVVEAERGGAQATTDVAVEQGGTV---------MAGLLNKCLEAALAEVPQGDDVLPLLRDLSDAWMDAEACALKN--TDDADDDEMHRRGAVVGAGN--AGPPRVVRLCAFNFSTVGMPLDTATGSELQALEVVRCLQGVVTALHKIENFHRRCNLVLKTTGGSGDESNGNSHRLVAWRAFQHEVRAAAANXXXXXXXXXXXXXXXXXXRGRQGRRPSAGM---------------KEKEMAKAGLVLLGELEPLERSPEGLVKSPLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALP----SCGDPSYAEA-KRRAEVLPPSHFSKV 1685          
BLAST of mRNA_L-elsbetiae_contig5841.14295.1 vs. uniprot
Match: A0A6H5JD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD11_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.300e-32
Identity = 178/464 (38.36%), Postives = 206/464 (44.40%), Query Frame = 0
Query:  266 SGRRRSVRGVRAGGALLEHEDGGASRQAPQAPLAQQACGRGGXXXXXXXXXXXGAWDVTTGGARGEKGAQTAQGGVVNGG----QGQ-------TAIMANLL--------NKCMETVRAEVPLEDALLPPLESLAAALADAEGCVLKN-DAVRAAVDAGVRRRAVHSERGKSAAAGPRVVRLCAYDFSTVGMPLDTTVGSEQPGGGGTAVTTAVAFQCAGTEN--RRITFILRAXXXXXXXXXXXSG---LAAWRVLLRELRAAXXXXXXXXXXXXSDSRGAGVGTSC----RARTAPTXXXXXXRGAARLGYLLARERETSNAARVLLGELEPLER------------------------------------------------------LEGPICSALRDRLASLLSSLIRFTLRIRLDAPPEKLTRVPAVLPLLPPSGGHXXXXXXXRRRAEVSRPSHFSK 646
            S RR+S+RG RAGG+LLE  D  A+ Q   +   Q+  G GGXXXXXXX           GG +        QGG V       QG        T  +A LL        NKC+ET RA+VP  D +L  L  L+ A  DAE C LKN DA  A  D   RR AV    G   A  PRVVRLCA++FSTVGMPLDT  GSE            V       +N  +R  FIL+                 L AW+  LRE+RAA  XXXXXXXXXX                + R  P                  +E+E + A  VLLGELEPLER                                                      L+G + S LRDRLAS+LSSLIRF LRIRLDAPPE+LTR P  LP    S G        +RRAEV  PSHFSK
Sbjct: 1819 STRRKSIRGSRAGGSLLE--DNTAAPQVEASVFLQEGPG-GGXXXXXXXSGRALVVGAERGGTQATTDVAVEQGGTVMADLLNKQGSCRDRCSSTHSLARLLAHSHDNENNKCLETARADVPQGDDVLQLLRDLSDAWIDAEACALKNADAAAATADEMHRRGAVV---GAGNAGPPRVVRLCAFNFSTVGMPLDTAAGSELHALEVVRCLKGVVTALHKIQNFHKRCNFILKTAGGSGDESNGNGNSNRLVAWKAFLREVRAAAAXXXXXXXXXXXXXXXXXXXXXXXRDRQGRRPPAGM---------------KEKEMAKAGLVLLGELEPLERIPEVRRRGQEESGGSPAGTGGQMHVLSFVALETWNLVSVCRNFTPYTIRTCVAPLKGLVKSPLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALP----SCGDPSYAEA-KRRAEVLPPSHFSK 2256          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5841.14295.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV49_ECTSI4.520e-4244.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD11_9PHAE1.300e-3238.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5841contigL-elsbetiae_contig5841:6227..11861 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5841.14295.1mRNA_L-elsbetiae_contig5841.14295.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5841 6227..11861 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5841.14295.1 ID=prot_L-elsbetiae_contig5841.14295.1|Name=mRNA_L-elsbetiae_contig5841.14295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=648bp
RPPRCSERRRSSAALAAPALDGGTLGSEGERTGGAESSDGQDITPPPLEA
ARPPRRSGRRRSITPKMFLLQQQCQEDDGVSLAAAPSPVVVMAAATATSD
AATSESSPSLVSAELFAGEDTLPLETARPPRRSGKRRSVAPSMPRSASPA
PAPAATSSAPAAVAATRDPSLSASAGTPFRSKRHVLLVARGGADRSRRAC
PARHHQHQHQRRRVARPLPAAAPSEEEDKGPPPTAVGAEQAAQQDELAAQ
QGQQEESKPSKTKRRSGRRRSVRGVRAGGALLEHEDGGASRQAPQAPLAQ
QACGRGGGGGAGAGEGEGGAWDVTTGGARGEKGAQTAQGGVVNGGQGQTA
IMANLLNKCMETVRAEVPLEDALLPPLESLAAALADAEGCVLKNDAVRAA
VDAGVRRRAVHSERGKSAAAGPRVVRLCAYDFSTVGMPLDTTVGSEQPGG
GGTAVTTAVAFQCAGTENRRITFILRAGGGGGDESGGGSGLAAWRVLLRE
LRAAATAAAAAATTAASDSRGAGVGTSCRARTAPTGGGGGGRGAARLGYL
LARERETSNAARVLLGELEPLERLEGPICSALRDRLASLLSSLIRFTLRI
RLDAPPEKLTRVPAVLPLLPPSGGHHPSAAEERRRAEVSRPSHFSKV*
back to top