mRNA_L-elsbetiae_contig5841.14295.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5841.14295.1 vs. uniprot
Match: D7FV49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV49_ECTSI) HSP 1 Score: 175 bits (443), Expect = 4.520e-42 Identity = 172/388 (44.33%), Postives = 196/388 (50.52%), Query Frame = 1 Query: 796 SGRRRSVRGVRAGGALLEHEDGGASRQAPQ--APLAQQACGRGGXXXXXXXXXXXGAWDVTTGGARGEKGAQTAQGGVVNGGQGQTAIMANLLNKCMETVRAEVPLEDALLPPLESLAAALADAEGCVLKNDAVRAAVDAGVRRRAVHSERGKSAAAGPRVVRLCAYDFSTVGMPLDTTVGSEQPGGGGTAVTTAVAFQCAGTEN--RRITFILRAXXXXXXXXXXXSG-LAAWRVLLRELRAAXXXXXXXXXXXXSDSRGAGVGTSCRARTAPTXXXXXXRGAARLGYLLARERETSNAARVLLGELEPLERL-EGPICSALRDRLASLLSSLIRFTLRIRLDAPPEKLTRVPAVLPLLPPSGGHXXXXXXXRRRAEVSRPSHFSKV 1941 S RR+S+RG RAGG+LLE + APQ AP+ Q GGXXXXXX + GGA+ QGG V MA LLNKC+E AEVP D +LP L L+ A DAE C LKN A D + RR G A PRVVRLCA++FSTVGMPLDT GSE V EN RR +L+ S L AWR E+RAA XXXXXXXXX + R +E+E + A VLLGELEPLER EG + S LRDRLAS+LSSLIRF LRIRLDAPPE+LTR P LP S G +RRAEV PSHFSKV Sbjct: 1336 STRRKSIRGSRAGGSLLEE-----NTAAPQVGAPVFLQEGPGGGXXXXXXGSGRALVVEAERGGAQATTDVAVEQGGTV---------MAGLLNKCLEAALAEVPQGDDVLPLLRDLSDAWMDAEACALKN--TDDADDDEMHRRGAVVGAGN--AGPPRVVRLCAFNFSTVGMPLDTATGSELQALEVVRCLQGVVTALHKIENFHRRCNLVLKTTGGSGDESNGNSHRLVAWRAFQHEVRAAAANXXXXXXXXXXXXXXXXXXRGRQGRRPSAGM---------------KEKEMAKAGLVLLGELEPLERSPEGLVKSPLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALP----SCGDPSYAEA-KRRAEVLPPSHFSKV 1685
BLAST of mRNA_L-elsbetiae_contig5841.14295.1 vs. uniprot
Match: A0A6H5JD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD11_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.300e-32 Identity = 178/464 (38.36%), Postives = 206/464 (44.40%), Query Frame = 1 Query: 796 SGRRRSVRGVRAGGALLEHEDGGASRQAPQAPLAQQACGRGGXXXXXXXXXXXGAWDVTTGGARGEKGAQTAQGGVVNGG----QGQ-------TAIMANLL--------NKCMETVRAEVPLEDALLPPLESLAAALADAEGCVLKN-DAVRAAVDAGVRRRAVHSERGKSAAAGPRVVRLCAYDFSTVGMPLDTTVGSEQPGGGGTAVTTAVAFQCAGTEN--RRITFILRAXXXXXXXXXXXSG---LAAWRVLLRELRAAXXXXXXXXXXXXSDSRGAGVGTSC----RARTAPTXXXXXXRGAARLGYLLARERETSNAARVLLGELEPLER------------------------------------------------------LEGPICSALRDRLASLLSSLIRFTLRIRLDAPPEKLTRVPAVLPLLPPSGGHXXXXXXXRRRAEVSRPSHFSK 1938 S RR+S+RG RAGG+LLE D A+ Q + Q+ G GGXXXXXXX GG + QGG V QG T +A LL NKC+ET RA+VP D +L L L+ A DAE C LKN DA A D RR AV G A PRVVRLCA++FSTVGMPLDT GSE V +N +R FIL+ L AW+ LRE+RAA XXXXXXXXXX + R P +E+E + A VLLGELEPLER L+G + S LRDRLAS+LSSLIRF LRIRLDAPPE+LTR P LP S G +RRAEV PSHFSK Sbjct: 1819 STRRKSIRGSRAGGSLLE--DNTAAPQVEASVFLQEGPG-GGXXXXXXXSGRALVVGAERGGTQATTDVAVEQGGTVMADLLNKQGSCRDRCSSTHSLARLLAHSHDNENNKCLETARADVPQGDDVLQLLRDLSDAWIDAEACALKNADAAAATADEMHRRGAVV---GAGNAGPPRVVRLCAFNFSTVGMPLDTAAGSELHALEVVRCLKGVVTALHKIQNFHKRCNFILKTAGGSGDESNGNGNSNRLVAWKAFLREVRAAAAXXXXXXXXXXXXXXXXXXXXXXXRDRQGRRPPAGM---------------KEKEMAKAGLVLLGELEPLERIPEVRRRGQEESGGSPAGTGGQMHVLSFVALETWNLVSVCRNFTPYTIRTCVAPLKGLVKSPLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALP----SCGDPSYAEA-KRRAEVLPPSHFSK 2256 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5841.14295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5841.14295.1 >prot_L-elsbetiae_contig5841.14295.1 ID=prot_L-elsbetiae_contig5841.14295.1|Name=mRNA_L-elsbetiae_contig5841.14295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=648bp RPPRCSERRRSSAALAAPALDGGTLGSEGERTGGAESSDGQDITPPPLEAback to top mRNA from alignment at L-elsbetiae_contig5841:6227..11861+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5841.14295.1 ID=mRNA_L-elsbetiae_contig5841.14295.1|Name=mRNA_L-elsbetiae_contig5841.14295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5635bp|location=Sequence derived from alignment at L-elsbetiae_contig5841:6227..11861+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5841:6227..11861+ >mRNA_L-elsbetiae_contig5841.14295.1 ID=mRNA_L-elsbetiae_contig5841.14295.1|Name=mRNA_L-elsbetiae_contig5841.14295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3888bp|location=Sequence derived from alignment at L-elsbetiae_contig5841:6227..11861+ (Laminarionema elsbetiae ELsaHSoW15)back to top |