mRNA_L-elsbetiae_contig5841.14295.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5841.14295.1
Unique NamemRNA_L-elsbetiae_contig5841.14295.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5841.14295.1 vs. uniprot
Match: D7FV49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV49_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.520e-42
Identity = 172/388 (44.33%), Postives = 196/388 (50.52%), Query Frame = 1
Query:  796 SGRRRSVRGVRAGGALLEHEDGGASRQAPQ--APLAQQACGRGGXXXXXXXXXXXGAWDVTTGGARGEKGAQTAQGGVVNGGQGQTAIMANLLNKCMETVRAEVPLEDALLPPLESLAAALADAEGCVLKNDAVRAAVDAGVRRRAVHSERGKSAAAGPRVVRLCAYDFSTVGMPLDTTVGSEQPGGGGTAVTTAVAFQCAGTEN--RRITFILRAXXXXXXXXXXXSG-LAAWRVLLRELRAAXXXXXXXXXXXXSDSRGAGVGTSCRARTAPTXXXXXXRGAARLGYLLARERETSNAARVLLGELEPLERL-EGPICSALRDRLASLLSSLIRFTLRIRLDAPPEKLTRVPAVLPLLPPSGGHXXXXXXXRRRAEVSRPSHFSKV 1941
            S RR+S+RG RAGG+LLE      +  APQ  AP+  Q    GGXXXXXX        +   GGA+        QGG V         MA LLNKC+E   AEVP  D +LP L  L+ A  DAE C LKN     A D  + RR      G   A  PRVVRLCA++FSTVGMPLDT  GSE            V       EN  RR   +L+            S  L AWR    E+RAA   XXXXXXXXX            + R                     +E+E + A  VLLGELEPLER  EG + S LRDRLAS+LSSLIRF LRIRLDAPPE+LTR P  LP    S G        +RRAEV  PSHFSKV
Sbjct: 1336 STRRKSIRGSRAGGSLLEE-----NTAAPQVGAPVFLQEGPGGGXXXXXXGSGRALVVEAERGGAQATTDVAVEQGGTV---------MAGLLNKCLEAALAEVPQGDDVLPLLRDLSDAWMDAEACALKN--TDDADDDEMHRRGAVVGAGN--AGPPRVVRLCAFNFSTVGMPLDTATGSELQALEVVRCLQGVVTALHKIENFHRRCNLVLKTTGGSGDESNGNSHRLVAWRAFQHEVRAAAANXXXXXXXXXXXXXXXXXXRGRQGRRPSAGM---------------KEKEMAKAGLVLLGELEPLERSPEGLVKSPLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALP----SCGDPSYAEA-KRRAEVLPPSHFSKV 1685          
BLAST of mRNA_L-elsbetiae_contig5841.14295.1 vs. uniprot
Match: A0A6H5JD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD11_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.300e-32
Identity = 178/464 (38.36%), Postives = 206/464 (44.40%), Query Frame = 1
Query:  796 SGRRRSVRGVRAGGALLEHEDGGASRQAPQAPLAQQACGRGGXXXXXXXXXXXGAWDVTTGGARGEKGAQTAQGGVVNGG----QGQ-------TAIMANLL--------NKCMETVRAEVPLEDALLPPLESLAAALADAEGCVLKN-DAVRAAVDAGVRRRAVHSERGKSAAAGPRVVRLCAYDFSTVGMPLDTTVGSEQPGGGGTAVTTAVAFQCAGTEN--RRITFILRAXXXXXXXXXXXSG---LAAWRVLLRELRAAXXXXXXXXXXXXSDSRGAGVGTSC----RARTAPTXXXXXXRGAARLGYLLARERETSNAARVLLGELEPLER------------------------------------------------------LEGPICSALRDRLASLLSSLIRFTLRIRLDAPPEKLTRVPAVLPLLPPSGGHXXXXXXXRRRAEVSRPSHFSK 1938
            S RR+S+RG RAGG+LLE  D  A+ Q   +   Q+  G GGXXXXXXX           GG +        QGG V       QG        T  +A LL        NKC+ET RA+VP  D +L  L  L+ A  DAE C LKN DA  A  D   RR AV    G   A  PRVVRLCA++FSTVGMPLDT  GSE            V       +N  +R  FIL+                 L AW+  LRE+RAA  XXXXXXXXXX                + R  P                  +E+E + A  VLLGELEPLER                                                      L+G + S LRDRLAS+LSSLIRF LRIRLDAPPE+LTR P  LP    S G        +RRAEV  PSHFSK
Sbjct: 1819 STRRKSIRGSRAGGSLLE--DNTAAPQVEASVFLQEGPG-GGXXXXXXXSGRALVVGAERGGTQATTDVAVEQGGTVMADLLNKQGSCRDRCSSTHSLARLLAHSHDNENNKCLETARADVPQGDDVLQLLRDLSDAWIDAEACALKNADAAAATADEMHRRGAVV---GAGNAGPPRVVRLCAFNFSTVGMPLDTAAGSELHALEVVRCLKGVVTALHKIQNFHKRCNFILKTAGGSGDESNGNGNSNRLVAWKAFLREVRAAAAXXXXXXXXXXXXXXXXXXXXXXXRDRQGRRPPAGM---------------KEKEMAKAGLVLLGELEPLERIPEVRRRGQEESGGSPAGTGGQMHVLSFVALETWNLVSVCRNFTPYTIRTCVAPLKGLVKSPLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALP----SCGDPSYAEA-KRRAEVLPPSHFSK 2256          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5841.14295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV49_ECTSI4.520e-4244.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD11_9PHAE1.300e-3238.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5841contigL-elsbetiae_contig5841:6227..11861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1944
Cds size1944
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.8969402-CDS-L-elsbetiae_contig5841:6226..67531622816629.8969402-CDS-L-elsbetiae_contig5841:6226..6753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 6227..6753 +
1691683697.46364-CDS-L-elsbetiae_contig5841:6226..67531691683697.46364-CDS-L-elsbetiae_contig5841:6226..6753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 6227..6753 +
1622816629.9108212-CDS-L-elsbetiae_contig5841:6934..70631622816629.9108212-CDS-L-elsbetiae_contig5841:6934..7063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 6935..7063 +
1691683697.4723272-CDS-L-elsbetiae_contig5841:6934..70631691683697.4723272-CDS-L-elsbetiae_contig5841:6934..7063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 6935..7063 +
1622816629.9254134-CDS-L-elsbetiae_contig5841:7494..79121622816629.9254134-CDS-L-elsbetiae_contig5841:7494..7912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 7495..7912 +
1691683697.4802809-CDS-L-elsbetiae_contig5841:7494..79121691683697.4802809-CDS-L-elsbetiae_contig5841:7494..7912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 7495..7912 +
1622816629.9368804-CDS-L-elsbetiae_contig5841:8172..83321622816629.9368804-CDS-L-elsbetiae_contig5841:8172..8332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 8173..8332 +
1691683697.4887404-CDS-L-elsbetiae_contig5841:8172..83321691683697.4887404-CDS-L-elsbetiae_contig5841:8172..8332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 8173..8332 +
1622816629.9474077-CDS-L-elsbetiae_contig5841:8871..90851622816629.9474077-CDS-L-elsbetiae_contig5841:8871..9085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 8872..9085 +
1691683697.499522-CDS-L-elsbetiae_contig5841:8871..90851691683697.499522-CDS-L-elsbetiae_contig5841:8871..9085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 8872..9085 +
1622816629.9593036-CDS-L-elsbetiae_contig5841:9663..99401622816629.9593036-CDS-L-elsbetiae_contig5841:9663..9940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 9664..9940 +
1691683697.5079904-CDS-L-elsbetiae_contig5841:9663..99401691683697.5079904-CDS-L-elsbetiae_contig5841:9663..9940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 9664..9940 +
1622816629.9733264-CDS-L-elsbetiae_contig5841:11642..118611622816629.9733264-CDS-L-elsbetiae_contig5841:11642..11861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 11643..11861 +
1691683697.5161304-CDS-L-elsbetiae_contig5841:11642..118611691683697.5161304-CDS-L-elsbetiae_contig5841:11642..11861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5841 11643..11861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5841.14295.1prot_L-elsbetiae_contig5841.14295.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5841 6227..11861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5841.14295.1

>prot_L-elsbetiae_contig5841.14295.1 ID=prot_L-elsbetiae_contig5841.14295.1|Name=mRNA_L-elsbetiae_contig5841.14295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=648bp
RPPRCSERRRSSAALAAPALDGGTLGSEGERTGGAESSDGQDITPPPLEA
ARPPRRSGRRRSITPKMFLLQQQCQEDDGVSLAAAPSPVVVMAAATATSD
AATSESSPSLVSAELFAGEDTLPLETARPPRRSGKRRSVAPSMPRSASPA
PAPAATSSAPAAVAATRDPSLSASAGTPFRSKRHVLLVARGGADRSRRAC
PARHHQHQHQRRRVARPLPAAAPSEEEDKGPPPTAVGAEQAAQQDELAAQ
QGQQEESKPSKTKRRSGRRRSVRGVRAGGALLEHEDGGASRQAPQAPLAQ
QACGRGGGGGAGAGEGEGGAWDVTTGGARGEKGAQTAQGGVVNGGQGQTA
IMANLLNKCMETVRAEVPLEDALLPPLESLAAALADAEGCVLKNDAVRAA
VDAGVRRRAVHSERGKSAAAGPRVVRLCAYDFSTVGMPLDTTVGSEQPGG
GGTAVTTAVAFQCAGTENRRITFILRAGGGGGDESGGGSGLAAWRVLLRE
LRAAATAAAAAATTAASDSRGAGVGTSCRARTAPTGGGGGGRGAARLGYL
LARERETSNAARVLLGELEPLERLEGPICSALRDRLASLLSSLIRFTLRI
RLDAPPEKLTRVPAVLPLLPPSGGHHPSAAEERRRAEVSRPSHFSKV*
back to top

mRNA from alignment at L-elsbetiae_contig5841:6227..11861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5841.14295.1 ID=mRNA_L-elsbetiae_contig5841.14295.1|Name=mRNA_L-elsbetiae_contig5841.14295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5635bp|location=Sequence derived from alignment at L-elsbetiae_contig5841:6227..11861+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCCTCCTCGCTGCTCGGAGCGACGTCGATCGAGTGCGGCACTCGCCGC GCCTGCTCTTGATGGGGGGACGCTGGGGTCGGAGGGGGAGCGGACCGGCG GTGCTGAGTCTAGTGACGGCCAGGACATCACCCCCCCGCCGCTCGAAGCG GCACGTCCTCCCCGCCGCTCGGGAAGGCGCCGGTCGATCACTCCCAAGAT GTTTCTGCTTCAGCAGCAGTGCCAAGAGGACGACGGAGTTTCGTTGGCGG CGGCGCCCTCTCCGGTGGTGGTGATGGCGGCTGCCACGGCCACGTCGGAC GCGGCGACTTCGGAGTCATCGCCTTCACTCGTGAGCGCTGAGCTCTTTGC CGGCGAGGACACCCTTCCGCTCGAAACGGCACGTCCTCCTCGTCGCTCGG GGAAGCGCCGATCGGTCGCGCCGAGCATGCCCCGCTCGGCATCACCAGCA CCAGCACCAGCGGCGACGAGTAGCGCGCCCGCTGCCGTGGCGGCGACACG GGATCCCTCGCTGTCGGCCAGCGCAGGGTCACGTGACCAAGGCGACATTA GCCTCCTGCACCGAGAGGATCAAAAAGGTAGAGACGTTTCCTTGGCGGCG GCACCCTCCCCGGCGGTGGTGGTGATGGCGGCTGCCACGGCCGCGTCGGA CGCGGCGACTTCGGAGTCATCGCCTTCACTCGTGAGCGCTGAGCTCTTTG CCGGCGAGGACACCCTTCCGCTCGAAACGGCACGTCCTCCTCGTCGCTCG GGGAGGCGCCGATCGGTCGCGCCGAGCATGCCCCGCTCGGCATCACCAGC ACCAGCACCAGCGGCGACGAGTAGCGCGCCCGCTGCCGTGGCGGCGACAC GGGATCCCTCGCTGTCGGCCGGCGCAGGGTCACGTGACCAAGGCGACATT AGCCTCCTGCGTCGAGAGGATCAAAAAGGTAGAGACGTTTCCTTGGCGGC GGCACCCTCCCCGGCGGTGGTGGTGATGGCGGCTGCCACGGCCGCGTCGG ACGTGGCGACGTCGGAGTCGTCGCCTTCACTCGTGAGCGCTGAACTCTTT GCCGGCGAGGACACCCTTCCGCTCGAAACGGCACGTCCTCCTCGTCGCTC GGGAAGACGCCGGTCGGTGGCGGTGCTGAGGAGGAGACGCCCGGCCGGCG GCGAAGCCGGAGGCAAAGCGCTACCTCCGGCTGCTAATTCGGCCGCCGAA GCCAACGCCGCGGCAGCGGTGGCAACAGCGGCGGCAACCGCCGCACCCTC GGCCTCGGCCCCTGCGAGCGCCGCGGCCCCGTCGGAGGAGGAGGACAAGG GGCCGCCGCCGACCGCCGTTGGGGCGGAGCAGGCCGCGCAGCAGGACGAG CTTGCGGCGCAGCAGGGCCAGCAGGAGGAATCGAAGCCGAGCAAGACCAA GCGCCGCTCGGGAAGGCGCAGGTCGGTGCGCGGCGTGCGTGCGGGGGGGG CGTTGTTGGAGCATGAAGACGGGGGTGCTTCGCGGCAGGCCCCTCAGGCA CCCCTGGCACAGCAGGCGTGTGGCAGGGGCGGGGGCGGGGGCGCGGGCGC GGGAGAGGGGGAGGGGGGGGCGTGGGACGTCACGACGGGAGGAGCTCGTG GGGAGAAAGGGGCGCAGACAGCGCAGGGGGGCGTCGTGAATGGAGGGCAA GGGCAAACCGCCATAATGGCTAACTTGCTGAACAAGGTGAACTTTGTAGG TATCCCCCATGTTCGTGTAAATACAGAGCGAGGACTGCTGTGTGCAGTTT TCCAGCTTTGAAGTACATTGAAGGAAGCTCAAAACAAAACAAACAGAGAG TTGGTTTTGTGTTGGGGGTTTCAGGGCAAATATCTAGAAGGTAAAACTTG AGATAAATACCTCTGCCGCAAAGCAGCGACGTACTCAACCTTCCCGGCTT CTCCGCACGCACGCACCGCCGCTGTCAACCTCCCTCCACAAACAAGTGCA TGGAGACGGTGAGGGCAGAGGTCCCGCTAGAGGACGCCCTGCTGCCGCCC CTGGAGTCGCTGGCGGCGGCGCTTGCGGACGCGGAAGGTTGCGTTCTCAA GAACGACGCGGTGCGGGCCGCGGTGGACGCAGGTGTGCGGCGGCGGGCTG TACACAGTGTATGCTTTCGGTTTGCTCGGACGTGACGTGCGTGTTGTCGA GCGCCCGCTCGCTTCTGCCGTCCGCCGGACAGGCCGCGATCTCTTTCTTC GACATTGGGCATCGTACATATCATTGGGTGTCGAACCGTGTCAGAGGTTG GTGGGCGCTTGCTGCTGTTGCGGCGTTGGGGGTATTGGTTTATACCTACA CGTTTAAAGCTTACAAGCTTTATGTAGGGGTAAATGTGAAATATTTTCCT CAAGGGAGCGGGGGGGGCTTTTGTACAGGTTGGTACATGAAAGGGAGGGG GTACGGTGGCGGCAGCTAATCTAAGCCGATGCATCCGTTTCCGACGAGGG GTACAGGGCCAACCTACGCCCATGAGGGTATGTATGTATGTATGTATGTA TGTACGGATGCGCGTGCGTGGAGTAGGCCGTTTCCAGCGCTTCGCCTGGG GTTTCGAGTGCAGCCAGAGTGCCAACCCGCCCATGACGTGTCTGTCTGGT ATCTACCGTGATGCCTTGTCGTTGTCGTCCCTCTGCCCGCTGCAGGCGAG CGGGGGAAAAGCGCAGCTGCAGGGCCGAGAGTGGTGCGCCTGTGCGCGTA CGACTTCTCTACGGTGGGCATGCCCTTGGACACGACGGTTGGTTCGGAGC AACCAGGTGGGGGGGGAACAGCGGTAACAACAGCAGTAGCCTTTCAATGC GCCGGAACGGAAAACAGACGAATAACTTTTATTCTCCGCGCGGGGGGAGG AGGGGGGGAGTGAGTCGCGGTTCGCTTGTGTAATCTGCGCGTCTCGCGCG ATGCGATCGCGGGGCGCTTTTTAAGGCTGTGTGTAGGTACAATATCGCGT GCACCGACTAAATATGTACTTAATTGTTATTTGCGTAGAGGAATGTATCC ATATGCATGATTTGTTTGTATATTTTGTGCGGGTGAAGCCTGCCTGCATC GACGCGTGAACTGGCGAACGAGTATGTAATGCTTCGGCAGGGCAGGCTTG TCCGTGATGCACCGCACGCTCGACAGCCTTCGCAGCTAAATACATCTCCT ATTTTGTAGTAGAAGACGCTTGGTCCATATTTACCAGTACATAAAATATC ATGTAGTTATTGTTTTATTTATTTTTCTCTTCTGACGAGGGCAGGGTCCT TCCTGGGTGGGTTTTGTTTCGCTCGCCCGCCCGCTCCTTTTCTTTCTCGC ATCGCTCGCGCAGCCGAGGAAGCGGCGCGATGCCTGGAGCGCGTGATCGG CGCGCAGCAAGATCTACGGGAGGCTCTGGGGGGTCGCAGCGGAAGCGGCG GCGAGGGCGAGGGCGAGGGCGAGGGCGAGAGCGAGAGCGAGAGCGGCGGC GGAAGCGGCCTCGCCGCGTGGCGGGTGCTGCTGCGCGAACTGCGCGCCGC TGCCACTGCCGCTGCCGCTGCCGCTACCACTGCTGCCTCTGATTCTCGAG GAGCCGGGGTTGGCACTTCCTGCCGTGCGCGGACAGCACCCACAGGAGGA GGAGGAGGAGGAAGAGGTGCGGCCCGTCTGGGATACCTGCTCGCGAGAGA GAGGGAGACGTCGAACGCGGCGCGTGTCCTGCTGGGCGAGCTAGAGCCGC TGGAGAGACTCGAGGTGCGAACGAAAGCACACAAGCACGGGTCGATGGGT GCTGCCCATAGGCAAGACAGCGCTTGTCGTCCGGGCAGGTCTTTGTATCC TACAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGTGGGGGG GGGGGGGGTGTTGTCGCCCGCCTGGGAAGGGGGGACGGGGGGCCTCCTCT CACCCCCTAATTTATNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAAGGTGT GCCTCGGGTGGTTGCTGTCGGTTCGTCCGGACTATCTCCGTAGACGTTAA GCTAGGAGCTCTTCCTTCGTCGCCTGAATAATTTGAAAGGAAATACGGTA GTTAATCAAAAATGGAACCTAACCCACACTGAGACGGGATTCCGTGAGAT TCAATGGGTATTCCGTTACTAAAATGTATTTATATTATTGGGCCGGCCGG CCGAGAAAAAAACACTTCAAACATATACAAGTATTTATACAAATGTCTAC AGATGTGAGCGCTCTATCGTGAGTCCAAACCGTGAAAAAGTCGTTCCAGG GGTACTGTCTGTTGTAGACACAACTATTTAAAAAAAAAACTTCTCACCGC CCCGTTCCAGCGGGACTGACTACTGGCACGCAATCAGCGAGCCGCATATT AAACAGTGTTGGCGTCATCATGGTGTTTTTTATGTTGTCTCGTCGTTGTC GAAGAGCCGACGTCCCTCCCAGAGTTTTTTTCGTGAGGCGGAGCAAGCAG CTTGGGGTAGGTAGTTACAACAGTGTTCGATCGGGGCCACCGCTTTTTGC TGCTTGTGACGCTCGCTATTTACTGGGAGTAGAAGGACACAAGAGTACTC TCAACACGACCGTGCTCTTTGGGCCGTGTTTTCACGCTCACCACTGCGCA CACGCTCAGGAATGAGAGTCGCAAGAGAGAGAGAGACAAGAGAGAAAATA AAATAATTTAAAGCAGCTAGATATTTACAGCAGCACCGGATACACTCACC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCGTT NNNNNNCAAGAGGAAAAGGGAAAAAGAAAAAAAAAAAATAATTTAAAGCA GCTATATATTTACAGCAGGCCCGGATAACCCCCCCCCCCCCCCCCCCCCC CCAAAGGTAGACCCCGCAACTCGTTCCACTCCTTCCTGGAACCTTCACCC GCAAATACCGGGCCCCGTGCCACGCGAGCTCGTGCGAAACATGAAACACG CGCTGCCGACACCGACCCCCAACCCCGTCCTGCATGCCTGTACTGTGTAT GTTATGTACGTTTATACATGCGATAGGTCAAACTAACAAAAAAGAGAGGT TTCCCCGCGTTTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GCCCCCCCCCGCGCGCCCNNNNNNNNNNGGCTGTAGCGGGAGTGTGAGAT AGCGTTTCACGGATCACGGCAGAAACAAGAACAACACGGGGGCCGCCGCC CGCTGTGCCCCCCCCCCCCCCCCCCCACGCTCGCCGGCGACTACCCTGTT CGTCCTGGCTGTCCAGGGTCCCATCTGCAGCGCCCTGCGGGACCGGCTGG CGAGCTTGCTGTCGTCCCTCATCCGGTTCACCCTCAGGATCCGCCTCGAC GCCCCGCCGGAGAAGCTCACCAGGGTGCCGGCTGTCCTCCCCCTCCTCCC GCCGTCCGGCGGGCATCATCCGTCTGCCGCGGAGGAGAGGAGGAGGGCCG AGGTTTCCCGTCCCAGCCACTTCAGCAAGGTGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5841:6227..11861+

>mRNA_L-elsbetiae_contig5841.14295.1 ID=mRNA_L-elsbetiae_contig5841.14295.1|Name=mRNA_L-elsbetiae_contig5841.14295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3888bp|location=Sequence derived from alignment at L-elsbetiae_contig5841:6227..11861+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCCTCCTCGCTGCTCGGAGCGACGTCGATCGAGTGCGGCACTCGCCGC
GCCTGCTCTTGATGGGGGGACGCTGGGGTCGGAGGGGGAGCGGACCGGCG
GTGCTGAGTCTAGTGACGGCCAGGACATCACCCCCCCGCCGCTCGAAGCG
GCACGTCCTCCCCGCCGCTCGGGAAGGCGCCGGTCGATCACTCCCAAGAT
GTTTCTGCTTCAGCAGCAGTGCCAAGAGGACGACGGAGTTTCGTTGGCGG
CGGCGCCCTCTCCGGTGGTGGTGATGGCGGCTGCCACGGCCACGTCGGAC
GCGGCGACTTCGGAGTCATCGCCTTCACTCGTGAGCGCTGAGCTCTTTGC
CGGCGAGGACACCCTTCCGCTCGAAACGGCACGTCCTCCTCGTCGCTCGG
GGAAGCGCCGATCGGTCGCGCCGAGCATGCCCCGCTCGGCATCACCAGCA
CCAGCACCAGCGGCGACGAGTAGCGCGCCCGCTGCCGTGGCGGCGACACG
GGATCCCTCGCTGTCGGCCAGCGCAGGCGTCCTCCTCGCTGCTCGGAGCG
ACGTCGATCGAGTGCGGCACTCGCCGCGCCTGCTCTTGATGGGGGGACGC
TGGGGTCGGAGGGGGAGCGGACCGGCGGTGCTGAGTCTAGTGACGGCCAG
GACATCACCCCCCCGCCGCTCGAAGCGGCACGTCCTCCCCGCCGCTCGGG
AAGGCGCCGGTCGATCACTCCCAAGATGTTTCTGCTTCAGCAGCAGTGCC
AAGAGGACGACGGAGTTTCGTTGGCGGCGGCGCCCTCTCCGGTGGTGGTG
ATGGCGGCTGCCACGGCCACGTCGGACGCGGCGACTTCGGAGTCATCGCC
TTCACTCGTGAGCGCTGAGCTCTTTGCCGGCGAGGACACCCTTCCGCTCG
AAACGGCACGTCCTCCTCGTCGCTCGGGGAAGCGCCGATCGGTCGCGCCG
AGCATGCCCCGCTCGGCATCACCAGCACCAGCACCAGCGGCGACGAGTAG
CGCGCCCGCTGCCGTGGCGGCGACACGGGATCCCTCGCTGTCGGCCAGCG
CAGGGACACCCTTCCGCTCGAAACGGCACGTCCTCCTCGTCGCTCGGGGA
GGCGCCGATCGGTCGCGCCGAGCATGCCCCGCTCGGCATCACCAGCACCA
GCACCAGCGGCGACGAGTAGCGCGCCCGCTGCCGACACCCTTCCGCTCGA
AACGGCACGTCCTCCTCGTCGCTCGGGGAGGCGCCGATCGGTCGCGCCGA
GCATGCCCCGCTCGGCATCACCAGCACCAGCACCAGCGGCGACGAGTAGC
GCGCCCGCTGCCCGCCGCGGCCCCGTCGGAGGAGGAGGACAAGGGGCCGC
CGCCGACCGCCGTTGGGGCGGAGCAGGCCGCGCAGCAGGACGAGCTTGCG
GCGCAGCAGGGCCAGCAGGAGGAATCGAAGCCGAGCAAGACCAAGCGCCG
CTCGGGAAGGCGCAGGTCGGTGCGCGGCGTGCGTGCGGGGGGGGCGTTGT
TGGAGCATGAAGACGGGGGTGCTTCGCGGCAGGCCCCTCAGGCACCCCTG
GCACAGCAGGCGTGTGGCAGGGGCGGGGGCGGGGGCGCGGGCGCGGGAGA
GGGGGAGGGGGGGGCGTGGGACGTCACGACGGGAGGAGCTCGTGGGGAGA
AAGGGGCGCAGACAGCGCAGGGGGGCGTCGTGAATGGAGGGCAAGGGCAA
ACCGCCATAATGGCTAACTTGCTGAACAAGCGCCGCGGCCCCGTCGGAGG
AGGAGGACAAGGGGCCGCCGCCGACCGCCGTTGGGGCGGAGCAGGCCGCG
CAGCAGGACGAGCTTGCGGCGCAGCAGGGCCAGCAGGAGGAATCGAAGCC
GAGCAAGACCAAGCGCCGCTCGGGAAGGCGCAGGTCGGTGCGCGGCGTGC
GTGCGGGGGGGGCGTTGTTGGAGCATGAAGACGGGGGTGCTTCGCGGCAG
GCCCCTCAGGCACCCCTGGCACAGCAGGCGTGTGGCAGGGGCGGGGGCGG
GGGCGCGGGCGCGGGAGAGGGGGAGGGGGGGGCGTGGGACGTCACGACGG
GAGGAGCTCGTGGGGAGAAAGGGGCGCAGACAGCGCAGGGGGGCGTCGTG
AATGGAGGGCAAGGGCAAACCGCCATAATGGCTAACTTGCTGAACAAGTG
CATGGAGACGGTGAGGGCAGAGGTCCCGCTAGAGGACGCCCTGCTGCCGC
CCCTGGAGTCGCTGGCGGCGGCGCTTGCGGACGCGGAAGGTTGCGTTCTC
AAGAACGACGCGGTGCGGGCCGCGGTGGACGCAGGTGTGCGGCGGCGGGC
TGTACACATGCATGGAGACGGTGAGGGCAGAGGTCCCGCTAGAGGACGCC
CTGCTGCCGCCCCTGGAGTCGCTGGCGGCGGCGCTTGCGGACGCGGAAGG
TTGCGTTCTCAAGAACGACGCGGTGCGGGCCGCGGTGGACGCAGGTGTGC
GGCGGCGGGCTGTACACAGCGAGCGGGGGAAAAGCGCAGCTGCAGGGCCG
AGAGTGGTGCGCCTGTGCGCGTACGACTTCTCTACGGTGGGCATGCCCTT
GGACACGACGGTTGGTTCGGAGCAACCAGGTGGGGGGGGAACAGCGGTAA
CAACAGCAGTAGCCTTTCAATGCGCCGGAACGGAAAACAGACGAATAACT
TTTATTCTCCGCGCGGGGGGAGGAGGGGGGGAGCGAGCGGGGGAAAAGCG
CAGCTGCAGGGCCGAGAGTGGTGCGCCTGTGCGCGTACGACTTCTCTACG
GTGGGCATGCCCTTGGACACGACGGTTGGTTCGGAGCAACCAGGTGGGGG
GGGAACAGCGGTAACAACAGCAGTAGCCTTTCAATGCGCCGGAACGGAAA
ACAGACGAATAACTTTTATTCTCCGCGCGGGGGGAGGAGGGGGGGACGAG
AGCGGCGGCGGAAGCGGCCTCGCCGCGTGGCGGGTGCTGCTGCGCGAACT
GCGCGCCGCTGCCACTGCCGCTGCCGCTGCCGCTACCACTGCTGCCTCTG
ATTCTCGAGGAGCCGGGGTTGGCACTTCCTGCCGTGCGCGGACAGCACCC
ACAGGAGGAGGAGGAGGAGGAAGAGGTGCGGCCCGTCTGGGATACCTGCT
CGCGAGAGAGAGGGAGACGTCGAACGCGGCGCGTGTCCTGCTGGGCGAGC
TAGAGCCGCTGGAGAGACTCGAGCGAGAGCGGCGGCGGAAGCGGCCTCGC
CGCGTGGCGGGTGCTGCTGCGCGAACTGCGCGCCGCTGCCACTGCCGCTG
CCGCTGCCGCTACCACTGCTGCCTCTGATTCTCGAGGAGCCGGGGTTGGC
ACTTCCTGCCGTGCGCGGACAGCACCCACAGGAGGAGGAGGAGGAGGAAG
AGGTGCGGCCCGTCTGGGATACCTGCTCGCGAGAGAGAGGGAGACGTCGA
ACGCGGCGCGTGTCCTGCTGGGCGAGCTAGAGCCGCTGGAGAGACTCGAG
GGTCCCATCTGCAGCGCCCTGCGGGACCGGCTGGCGAGCTTGCTGTCGTC
CCTCATCCGGTTCACCCTCAGGATCCGCCTCGACGCCCCGCCGGAGAAGC
TCACCAGGGTGCCGGCTGTCCTCCCCCTCCTCCCGCCGTCCGGCGGGCAT
CATCCGTCTGCCGCGGAGGAGAGGAGGAGGGCCGAGGTTTCCCGTCCCAG
CCACTTCAGCAAGGTGTGAGGTCCCATCTGCAGCGCCCTGCGGGACCGGC
TGGCGAGCTTGCTGTCGTCCCTCATCCGGTTCACCCTCAGGATCCGCCTC
GACGCCCCGCCGGAGAAGCTCACCAGGGTGCCGGCTGTCCTCCCCCTCCT
CCCGCCGTCCGGCGGGCATCATCCGTCTGCCGCGGAGGAGAGGAGGAGGG
CCGAGGTTTCCCGTCCCAGCCACTTCAGCAAGGTGTGA
back to top