prot_L-elsbetiae_contig584.14288.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig584.14288.1
Unique Nameprot_L-elsbetiae_contig584.14288.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length170
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig584.14288.1 vs. uniprot
Match: D8LU32_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU32_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 9.730e-24
Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 0 
Query:    3 VVALVMRRLLELNPQRQAFFLVETDAQINRVFGQLRKEMGWAGSMSTMTVDTIALPSSRRSGRPGKGKGGSMGDALEIRRKLASVRATSVVVATACAFEHTLHQRYIDPDAICCVVIDEAHHSGKEHPFFRISKS 137
            V A+V++++L+ NP+RQA+FLVET A   +   +L+ E+G       M V +             +  GG  G       KL  VR  ++VVATA AFEH + +RYIDPDAICCVV+DEAHH GKEHPF R+++S
Sbjct:  259 VAAMVLKQMLDWNPERQAYFLVETTALAMQQTTRLQNELGGTVKKIEMLVGSSL-----------QAFGGKRGKIDHGLVKLECVRDANIVVATAGAFEHCMCKRYIDPDAICCVVLDEAHHCGKEHPFNRVARS 382
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig584.14288.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU32_ECTSI9.730e-2445.19DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 2..166
e-value: 7.2E-11
score: 43.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 5..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig584contigL-elsbetiae_contig584:5264..7015 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig584.14288.1mRNA_L-elsbetiae_contig584.14288.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig584 5264..7032 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig584.14288.1 ID=prot_L-elsbetiae_contig584.14288.1|Name=mRNA_L-elsbetiae_contig584.14288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MFVVALVMRRLLELNPQRQAFFLVETDAQINRVFGQLRKEMGWAGSMSTM
TVDTIALPSSRRSGRPGKGKGGSMGDALEIRRKLASVRATSVVVATACAF
EHTLHQRYIDPDAICCVVIDEAHHSGKEHPFFRISKSPYVVPNDEATAVM
AARSRKEEEREKDNRNRNSR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase