prot_L-elsbetiae_contig5839.14286.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5839.14286.1
Unique Nameprot_L-elsbetiae_contig5839.14286.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length315
Homology
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BLAST of mRNA_L-elsbetiae_contig5839.14286.1 vs. uniprot
Match: D7G5H1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H1_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.360e-41
Identity = 113/259 (43.63%), Postives = 146/259 (56.37%), Query Frame = 0 
Query:    6 RRGLQLLSEGDTVVNGVLNLYTAEGVAACEASCNGAFAEAFGVSDASIGCVCPEEEDATGR-RRRNL------------GESVAGRENNRSLRG-----LTALDTPAAAAFTARISGGLDGGAAALEFLSAFGPSALASSFGVEESELEVTTLTVTPPPSGDASETLTVITNFFDASDIPILAPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVVLGLLWK---NGGGPLAKAANFK-----RDSFRMHPQVT 238
            RR LQ+L++G+TV+NGVLNL+T EGVAACE SC  AFA AFG+ + S+GCVCP    A+   RRRNL             E   G  + RSLR      L   D+    AF+AR++GGL GGAAAL+ LS  G SA+AS+FGV+E ELE++TLTVTPP S +++ETL VIT++FDASDI I++  +                                 +   LLWK   +GGG +     FK     R+SFR   Q T
Sbjct:   32 RRSLQVLTDGETVLNGVLNLFTEEGVAACEGSCKDAFATAFGIDEVSVGCVCPISTSASDADRRRNLMGDNSKQPTSDSAEQNKGSSDRRSLRAQRRRWLAETDSSEPVAFSARVAGGLAGGAAALDLLSESGWSAVASAFGVDEDELEISTLTVTPPASTNSTETLEVITDYFDASDISIVSSLSTTEGTDWAGGGRGVALFLAMFVLLLMTFCCCGFLAGLLLWKAKKHGGGAVGGEKFFKSHLPERNSFRWGGQPT 290
[Close]
BLAST of mRNA_L-elsbetiae_contig5839.14286.1 vs. uniprot
Match: A0A6H5KUU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU0_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.770e-41
Identity = 113/258 (43.80%), Postives = 147/258 (56.98%), Query Frame = 0 
Query:    6 RRGLQLLSEGDTVVNGVLNLYTAEGVAACEASCNGAFAEAFGVSDASIGCVCPEEEDATGR-RRRNL-----------GESVAGRENNRSLRG-----LTALDTPAAAAFTARISGGLDGGAAALEFLSAFGPSALASSFGVEESELEVTTLTVTPPPSGDASETLTVITNFFDASDIPILAPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVVLGLLWK---NGGGPLAKAANFK-----RDSFRMHPQVT 238
            RR LQ+L++G+TV+NGVLNL+T EGVAACE SC GAFA AFG+ + S+GCVCP    A+   RRRNL            E   G  + RSLRG     L   ++    AF+AR++GGL GGAAAL  LS  G SA+AS+FGV+E ELE++TLTVTPP S ++++TL VIT++FDASDI I++  +                                 +   LLWK   +GGG +     FK     R+SFR   Q T
Sbjct:   32 RRSLQVLTDGETVLNGVLNLFTEEGVAACEGSCKGAFATAFGIDEVSVGCVCPMTTSASDADRRRNLMGDDKQPTSDSAEQNNGSSDRRSLRGQRRRWLAETNSSEPVAFSARVAGGLAGGAAALNLLSDSGWSAVASAFGVDEDELEISTLTVTPPASTNSTDTLEVITDYFDASDISIVSSLSTTEGTDWAGGGRGVALFLAMFVLLLMTFCCCGFLAGLLLWKAQKHGGGAVGADNFFKSRFPERNSFRWGDQPT 289
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5839.14286.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5H1_ECTSI1.360e-4143.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUU0_9PHAE3.770e-4143.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 214..315
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 188..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..187
NoneNo IPR availableTMHMMTMhelixcoord: 191..213

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5839contigL-elsbetiae_contig5839:1303..6522 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5839.14286.1mRNA_L-elsbetiae_contig5839.14286.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5839 1303..6524 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5839.14286.1 ID=prot_L-elsbetiae_contig5839.14286.1|Name=mRNA_L-elsbetiae_contig5839.14286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=315bp
ASGNTRRGLQLLSEGDTVVNGVLNLYTAEGVAACEASCNGAFAEAFGVSD
ASIGCVCPEEEDATGRRRRNLGESVAGRENNRSLRGLTALDTPAAAAFTA
RISGGLDGGAAALEFLSAFGPSALASSFGVEESELEVTTLTVTPPPSGDA
SETLTVITNFFDASDIPILAPSAAGGGSDWAGGGRGAALFLAMLVLLVLT
CCCGGCVVLGLLWKNGGGPLAKAANFKRDSFRMHPQVTENPPRPNSEGNA
AAASASAGGSSPSLVRRESASRSEDSGNTAAAKAADGGGGIGAGGSHGGD
EAAGGGGSTGGGRAP
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